Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   EL133_RS01730 Genome accession   NZ_LR134323
Coordinates   340249..341301 (+) Length   350 a.a.
NCBI ID   WP_006739667.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 335249..346301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS01715 (NCTC13766_00343) amiA 335768..337747 (+) 1980 WP_006738892.1 peptide ABC transporter substrate-binding protein Regulator
  EL133_RS01720 (NCTC13766_00344) amiC 337815..339314 (+) 1500 WP_006740654.1 ABC transporter permease Regulator
  EL133_RS01725 (NCTC13766_00345) amiD 339314..340240 (+) 927 WP_006739742.1 oligopeptide ABC transporter permease OppC Regulator
  EL133_RS01730 (NCTC13766_00346) amiE 340249..341301 (+) 1053 WP_006739667.1 ABC transporter ATP-binding protein Regulator
  EL133_RS01735 (NCTC13766_00347) amiF 341311..342228 (+) 918 WP_006738829.1 ATP-binding cassette domain-containing protein Regulator
  EL133_RS01740 (NCTC13766_00348) - 342253..344520 (-) 2268 WP_006739283.1 Xaa-Pro dipeptidyl-peptidase -
  EL133_RS01745 (NCTC13766_00349) - 344534..345193 (-) 660 WP_006739509.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39199.25 Da        Isoelectric Point: 7.1118

>NTDB_id=1121516 EL133_RS01730 WP_006739667.1 340249..341301(+) (amiE) [Streptococcus urinalis strain NCTC13766]
MSIDNTVILSAKKVVVEFQVRDRILTAIRGISLDLYQGEVLAIVGESGSGKSVLTKTFTGMLESNGKIASGQIIYRGQDL
TQLQSNKEWETIRGAKIATIFQDPMTSLDPIQTIGKQITEVIIKHQKVNHSKAKELALDYMHKVGIPEAKKRFYDYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIINLLKSLQQEYHFTIIFITHDLGVVASIANKVAVMYAGDIVE
YGTVEEIFYDPKHPYTWSLLSSLPQLADSNGILFSIPGTPPSLYKPIKGDAFAPRSQYAMAIDFEEDAPRFDISKTHWAK
TWLLHPDAPKVDKPVEIQNLHEKISHKHHI

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1121516 EL133_RS01730 WP_006739667.1 340249..341301(+) (amiE) [Streptococcus urinalis strain NCTC13766]
ATGTCCATAGATAATACTGTTATTTTAAGTGCTAAAAAGGTTGTTGTTGAATTTCAAGTAAGAGATCGTATTTTAACTGC
TATTAGGGGTATTTCACTTGATCTTTATCAAGGTGAAGTATTGGCCATTGTTGGAGAGTCTGGTTCTGGAAAATCTGTCT
TGACCAAAACTTTTACAGGTATGCTAGAATCAAACGGAAAAATTGCAAGTGGTCAAATAATCTATCGTGGTCAAGACTTA
ACGCAATTACAGTCAAATAAGGAATGGGAAACAATACGTGGTGCTAAAATAGCTACTATTTTTCAGGATCCAATGACAAG
TTTAGATCCAATTCAAACTATTGGAAAGCAAATTACAGAAGTGATCATCAAACATCAAAAAGTGAATCATAGCAAAGCTA
AAGAATTAGCTTTGGATTACATGCATAAAGTAGGTATCCCTGAAGCTAAAAAACGCTTTTATGATTATCCTTTTCAGTAT
TCTGGTGGTATGAGGCAACGTATAGTAATTGCAATTGCTTTAGCTTGTAGACCAGATATATTGATTTGTGATGAACCAAC
CACTGCCTTAGATGTTACCATTCAGGCACAAATTATTAATCTTTTAAAATCGTTACAGCAAGAGTACCATTTCACTATTA
TTTTTATTACTCATGATTTAGGTGTTGTAGCTAGTATCGCAAATAAAGTTGCAGTCATGTATGCAGGAGATATTGTGGAG
TATGGGACAGTTGAAGAAATTTTTTATGATCCAAAACACCCTTATACTTGGAGTCTTTTATCTAGTCTTCCTCAATTAGC
CGATAGCAATGGAATCCTCTTTTCCATTCCTGGGACACCTCCATCTCTTTACAAGCCAATAAAAGGAGATGCCTTTGCAC
CAAGATCACAATATGCAATGGCAATTGACTTTGAAGAAGATGCTCCAAGATTTGATATTTCTAAAACACATTGGGCTAAA
ACCTGGCTTTTACATCCAGATGCGCCAAAAGTTGACAAACCTGTGGAGATACAGAATTTACATGAAAAAATATCACATAA
ACATCATATCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.198

98.286

0.769
  amiE Streptococcus thermophilus LMG 18311

77.616

98.286

0.763
  amiE Streptococcus thermophilus LMD-9

77.616

98.286

0.763
  oppD Streptococcus mutans UA159

56.25

96

0.54

Multiple sequence alignment