Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL133_RS01735 Genome accession   NZ_LR134323
Coordinates   341311..342228 (+) Length   305 a.a.
NCBI ID   WP_006738829.1    Uniprot ID   G5KC68
Organism   Streptococcus urinalis strain NCTC13766     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 336311..347228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS01720 (NCTC13766_00344) amiC 337815..339314 (+) 1500 WP_006740654.1 ABC transporter permease Regulator
  EL133_RS01725 (NCTC13766_00345) amiD 339314..340240 (+) 927 WP_006739742.1 oligopeptide ABC transporter permease OppC Regulator
  EL133_RS01730 (NCTC13766_00346) amiE 340249..341301 (+) 1053 WP_006739667.1 ABC transporter ATP-binding protein Regulator
  EL133_RS01735 (NCTC13766_00347) amiF 341311..342228 (+) 918 WP_006738829.1 ATP-binding cassette domain-containing protein Regulator
  EL133_RS01740 (NCTC13766_00348) - 342253..344520 (-) 2268 WP_006739283.1 Xaa-Pro dipeptidyl-peptidase -
  EL133_RS01745 (NCTC13766_00349) - 344534..345193 (-) 660 WP_006739509.1 Crp/Fnr family transcriptional regulator -
  EL133_RS01750 (NCTC13766_00350) - 345389..346585 (+) 1197 WP_006740498.1 MFS transporter -
  EL133_RS01755 (NCTC13766_00351) - 346591..347043 (+) 453 WP_006738403.1 universal stress protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 34631.79 Da        Isoelectric Point: 6.6709

>NTDB_id=1121517 EL133_RS01735 WP_006738829.1 341311..342228(+) (amiF) [Streptococcus urinalis strain NCTC13766]
MTEKLIEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGEVINKHKSKV
KEKELIRKIQMIFQDPAASLNERATIDYIISEGLYNFNLYKDENDRKSKIIHMLNEVGLLSEHLSRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKIQKERDLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEDLFN
NPIHPYTKSLLSAVPIPDPILEKEKQLIVYHPEKHDYSVDKPSMVEISPGHFVWANQAEVEKYKQ

Nucleotide


Download         Length: 918 bp        

>NTDB_id=1121517 EL133_RS01735 WP_006738829.1 341311..342228(+) (amiF) [Streptococcus urinalis strain NCTC13766]
ATGACTGAAAAATTGATAGAAGTCAAAGACCTTGAAATTTCCTTTGGAGAAGGAAAAAAGAAATTTGTTGCTGTAAAAAA
TGCTAATTTTTTCATCAATAAAGGAGAAACGTTTTCTCTAGTTGGTGAATCTGGAAGTGGGAAAACAACTATTGGGCGTG
CCATCATTGGTTTAAATGAGACCAGTTCTGGTGAAATTAGATATGACGGAGAAGTCATTAATAAGCATAAATCAAAAGTA
AAAGAAAAAGAACTAATACGGAAAATTCAAATGATTTTTCAGGACCCAGCAGCTAGTTTGAATGAAAGAGCAACAATTGA
TTATATTATTTCTGAAGGATTATATAATTTCAACCTTTATAAAGATGAAAATGATAGAAAATCTAAAATTATTCATATGT
TAAATGAAGTGGGTTTGTTGTCAGAACATCTTAGCCGTTATCCTCATGAGTTTTCTGGTGGCCAACGGCAGCGCATCGGC
ATTGCGAGAGCACTTGTGATGGAGCCTGAATTTGTCATTGCTGATGAACCAATCTCAGCATTAGATGTATCTGTAAGGGC
TCAAGTATTGAATCTGTTAAAAAAAATTCAAAAAGAAAGAGATTTAACCTATCTTTTTATTGCTCATGATTTATCTGTCG
TTAGATTTATTTCAGATCGCATAGCTGTCATCCATAAAGGAGTTATTGTTGAAGTTGCTGAAACAGAAGACCTTTTTAAT
AATCCAATACATCCCTATACAAAATCTCTTTTATCAGCAGTACCAATACCAGACCCTATTTTAGAAAAAGAAAAACAACT
AATTGTTTACCATCCAGAAAAACATGATTATTCCGTTGATAAGCCAAGTATGGTTGAAATTAGTCCAGGTCATTTTGTTT
GGGCTAATCAAGCAGAAGTTGAAAAATACAAACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KC68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

80.328

100

0.803
  amiF Streptococcus thermophilus LMG 18311

79.672

100

0.797
  amiF Streptococcus thermophilus LMD-9

79.344

100

0.793

Multiple sequence alignment