Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VV93_RS12565 Genome accession   NZ_CP009261
Coordinates   2752727..2753953 (+) Length   408 a.a.
NCBI ID   WP_039554612.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2747727..2758953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS12545 (VV93_v1c24870) ampD 2748744..2749316 (-) 573 WP_039554604.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VV93_RS12550 (VV93_v1c24880) nadC 2749409..2750296 (+) 888 WP_039554606.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VV93_RS12555 (VV93_v1c24890) pilA 2750519..2750986 (+) 468 WP_039554608.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  VV93_RS12560 (VV93_v1c24900) pilB 2750990..2752678 (+) 1689 WP_039554610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VV93_RS12565 (VV93_v1c24910) pilC 2752727..2753953 (+) 1227 WP_039554612.1 type II secretion system F family protein Machinery gene
  VV93_RS12570 (VV93_v1c24920) pilD 2754047..2754916 (+) 870 WP_039554614.1 A24 family peptidase Machinery gene
  VV93_RS12575 (VV93_v1c24930) coaE 2754918..2755526 (+) 609 WP_039554617.1 dephospho-CoA kinase -
  VV93_RS12580 (VV93_v1c24940) zapD 2755559..2756299 (+) 741 WP_011079546.1 cell division protein ZapD -
  VV93_RS12585 (VV93_v1c24950) yacG 2756362..2756556 (+) 195 WP_011079545.1 DNA gyrase inhibitor YacG -
  VV93_RS12590 (VV93_v1c24960) rplS 2756821..2757174 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  VV93_RS12595 (VV93_v1c24970) trmD 2757216..2757965 (-) 750 WP_039554619.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VV93_RS12600 (VV93_v1c24980) rimM 2757993..2758541 (-) 549 WP_039554622.1 ribosome maturation factor RimM -
  VV93_RS12605 (VV93_v1c24990) rpsP 2758557..2758805 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45223.55 Da        Isoelectric Point: 10.3569

>NTDB_id=112141 VV93_RS12565 WP_039554612.1 2752727..2753953(+) (pilC) [Vibrio vulnificus strain 93U204]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=112141 VV93_RS12565 WP_039554612.1 2752727..2753953(+) (pilC) [Vibrio vulnificus strain 93U204]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTTTCCGGCAA
CACGCTTGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAAAAATCCA
GTGTGTCAGTTTTCACGAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTCAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCAGGTACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGTCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTAATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGCGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCAATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTTCCAGAACTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTGAACAAGATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCGCCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.5

98.039

0.77
  pilC Vibrio campbellii strain DS40M4

74.564

98.284

0.733
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment