Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   EL136_RS08695 Genome accession   NZ_LR134317
Coordinates   1835166..1836200 (-) Length   344 a.a.
NCBI ID   WP_232013965.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830166..1841200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS08660 (NCTC6180_01776) comYH 1830995..1831948 (-) 954 WP_043024962.1 class I SAM-dependent methyltransferase Machinery gene
  EL136_RS08665 (NCTC6180_01778) - 1832054..1833396 (+) 1343 WP_165626751.1 IS3 family transposase -
  EL136_RS08670 (NCTC6180_01779) comGG 1833431..1833793 (-) 363 WP_154804226.1 competence type IV pilus minor pilin ComGG -
  EL136_RS08675 (NCTC6180_01780) comYF 1833771..1834205 (-) 435 WP_042669824.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL136_RS08680 (NCTC6180_01781) comGE 1834192..1834482 (-) 291 WP_154804227.1 competence type IV pilus minor pilin ComGE -
  EL136_RS08685 (NCTC6180_01782) comGD 1834439..1834864 (-) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  EL136_RS08690 (NCTC6180_01783) comGC/cglC 1834842..1835165 (-) 324 WP_014622142.1 competence type IV pilus major pilin ComGC Machinery gene
  EL136_RS08695 (NCTC6180_01784) comYB 1835166..1836200 (-) 1035 WP_232013965.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL136_RS08700 (NCTC6180_01785) comGA/cglA 1836133..1837071 (-) 939 WP_154804229.1 competence type IV pilus ATPase ComGA Machinery gene
  EL136_RS08705 (NCTC6180_01786) - 1837227..1837895 (-) 669 WP_043024949.1 ATP-binding cassette domain-containing protein -
  EL136_RS08710 (NCTC6180_01787) - 1837897..1839900 (-) 2004 WP_154804230.1 DUF1430 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39508.74 Da        Isoelectric Point: 9.5576

>NTDB_id=1121292 EL136_RS08695 WP_232013965.1 1835166..1836200(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELTTILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFRKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1121292 EL136_RS08695 WP_232013965.1 1835166..1836200(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACGTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGTTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCTTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAACCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAGAAAGGAGCTAAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.572

98.547

0.538
  comYB Streptococcus mutans UA159

54.572

98.547

0.538
  comYB Streptococcus gordonii str. Challis substr. CH1

52.059

98.837

0.515
  comGB/cglB Streptococcus mitis NCTC 12261

49.107

97.674

0.48
  comGB/cglB Streptococcus mitis SK321

49.249

96.802

0.477
  comGB/cglB Streptococcus pneumoniae Rx1

48.949

96.802

0.474
  comGB/cglB Streptococcus pneumoniae D39

48.949

96.802

0.474
  comGB/cglB Streptococcus pneumoniae R6

48.949

96.802

0.474
  comGB/cglB Streptococcus pneumoniae TIGR4

48.949

96.802

0.474
  comGB Lactococcus lactis subsp. cremoris KW2

46.933

94.767

0.445

Multiple sequence alignment