Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EL136_RS08660 Genome accession   NZ_LR134317
Coordinates   1830995..1831948 (-) Length   317 a.a.
NCBI ID   WP_043024962.1    Uniprot ID   A0A7Z8ZY98
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1832054..1833396 1830995..1831948 flank 106


Gene organization within MGE regions


Location: 1830995..1833396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS08660 (NCTC6180_01776) comYH 1830995..1831948 (-) 954 WP_043024962.1 class I SAM-dependent methyltransferase Machinery gene
  EL136_RS08665 (NCTC6180_01778) - 1832054..1833396 (+) 1343 WP_165626751.1 IS3 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35708.69 Da        Isoelectric Point: 4.6973

>NTDB_id=1121289 EL136_RS08660 WP_043024962.1 1830995..1831948(-) (comYH) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MNFEKIEQAYELILENSQLIENDLKTHIYDAIVEQNSFYLGAQGASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKT
EPLQANHQFTPDAIGFIMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEIMGSS
AQFIQEDAVRPQLLKESDMIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLIEQALKYLKKDGFAIFLAPVNLLSSPQ
SHLLKQWLKGYAQVAALITLPEAVFGNPANAKSIIVLCKQSNRFAETFVYPIRDLKSVDNVRDFMENFKNWKRDNVI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1121289 EL136_RS08660 WP_043024962.1 1830995..1831948(-) (comYH) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGAATTTTGAAAAGATTGAACAAGCCTATGAGCTTATATTAGAAAATAGCCAGCTGATTGAAAATGATCTAAAAACGCA
TATCTATGATGCTATTGTTGAGCAGAATTCTTTTTATCTGGGAGCCCAAGGAGCAAGCCCTCAGGTTGCTAAAAATATTG
AGACGTTGAAGGCCTTGCAGCTAACCAAGGAGGAGTGGCGTCAGGCTTACCAGTTTGTTTTGATCAAGGCTGGGAAAACA
GAGCCATTACAGGCCAACCACCAATTTACCCCAGACGCGATCGGTTTTATCATGCTTTATATTTTGGAGACCTTGAGTTC
ACAAGAGTCACTTGATGTGCTTGAGATTGGCAGTGGAACAGGTAATTTAGCTCAAACTATTTTAAACCACTCACATAAGA
GCATTGATTATTTAGGCATTGAGCTTGATGATTTATTAATTGATCTATCAGCTAGTATTGCTGAAATCATGGGGTCGTCA
GCCCAGTTTATTCAAGAGGATGCTGTCAGACCTCAGCTGTTAAAGGAAAGTGATATGATCATTAGTGATTTGCCAGTTGG
CTTTTATCCTAACGATGATATTGCCAGCAGGTATCAGGTGGCTAGCTCAGATGAGCATACCTATGCCCATCATTTACTGA
TAGAGCAGGCCTTAAAGTACCTGAAAAAAGATGGCTTTGCTATTTTCTTAGCACCGGTAAATCTTTTGAGCAGCCCACAA
AGTCACCTCTTAAAACAATGGCTGAAGGGCTATGCTCAGGTTGCGGCCTTGATTACTTTGCCTGAGGCAGTGTTTGGAAA
TCCAGCTAATGCAAAATCGATTATTGTTCTTTGTAAGCAATCGAATCGCTTTGCAGAAACCTTTGTTTACCCCATTAGGG
ATTTGAAATCTGTTGATAATGTTCGTGATTTTATGGAAAACTTCAAAAATTGGAAACGGGATAATGTTATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z8ZY98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

63.291

99.685

0.631
  comYH Streptococcus mutans UA140

63.291

99.685

0.631

Multiple sequence alignment