Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | EL136_RS08675 | Genome accession | NZ_LR134317 |
| Coordinates | 1833771..1834205 (-) | Length | 144 a.a. |
| NCBI ID | WP_042669824.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus strain NCTC6180 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 1832054..1833396 | 1833771..1834205 | flank | 375 |
Gene organization within MGE regions
Location: 1832054..1834205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL136_RS08665 (NCTC6180_01778) | - | 1832054..1833396 (+) | 1343 | WP_165626751.1 | IS3 family transposase | - |
| EL136_RS08670 (NCTC6180_01779) | comGG | 1833431..1833793 (-) | 363 | WP_154804226.1 | competence type IV pilus minor pilin ComGG | - |
| EL136_RS08675 (NCTC6180_01780) | comYF | 1833771..1834205 (-) | 435 | WP_042669824.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16094.62 Da Isoelectric Point: 10.4621
>NTDB_id=1121290 EL136_RS08675 WP_042669824.1 1833771..1834205(-) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MKGSRLKAFTLIECLIALLVISGSLLVYQALTKSLMANERYLAANDQNNWLLFSQQLRAELSGTTLQGVRNNRLYVEKDK
KALSFGQVKGHDFRKAASNGQGYQPMLFGLSSSQITAVGQQVTIKLKWQSGLERTFIYAFQEKG
MKGSRLKAFTLIECLIALLVISGSLLVYQALTKSLMANERYLAANDQNNWLLFSQQLRAELSGTTLQGVRNNRLYVEKDK
KALSFGQVKGHDFRKAASNGQGYQPMLFGLSSSQITAVGQQVTIKLKWQSGLERTFIYAFQEKG
Nucleotide
Download Length: 435 bp
>NTDB_id=1121290 EL136_RS08675 WP_042669824.1 1833771..1834205(-) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
TTGAAAGGCAGTAGGCTAAAGGCTTTTACCTTGATAGAATGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTCTATTAGT
CTATCAGGCCTTAACCAAGAGCCTTATGGCAAATGAGAGGTATCTAGCAGCAAATGATCAGAACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTGTCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGCCATGATTTTAGAAAAGCAGCTAGCAATGGTCAAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTGACCATCAAGCTGAAATGGCAAAGCGGGTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
TTGAAAGGCAGTAGGCTAAAGGCTTTTACCTTGATAGAATGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTCTATTAGT
CTATCAGGCCTTAACCAAGAGCCTTATGGCAAATGAGAGGTATCTAGCAGCAAATGATCAGAACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTGTCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGCCATGATTTTAGAAAAGCAGCTAGCAATGGTCAAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTGACCATCAAGCTGAAATGGCAAAGCGGGTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
52.448 |
99.306 |
0.521 |
| comYF | Streptococcus mutans UA159 |
51.748 |
99.306 |
0.514 |
| comGF/cglF | Streptococcus mitis SK321 |
48.905 |
95.139 |
0.465 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
47.482 |
96.528 |
0.458 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
48.175 |
95.139 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
45.07 |
98.611 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae D39 |
45.07 |
98.611 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae R6 |
45.07 |
98.611 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
45.07 |
98.611 |
0.444 |