Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL115_RS07390 Genome accession   NZ_LR134307
Coordinates   1476400..1478379 (-) Length   659 a.a.
NCBI ID   WP_126441667.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC10708     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471400..1483379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS07370 (NCTC10708_01469) amiF 1471604..1472527 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  EL115_RS07375 (NCTC10708_01470) amiE 1472538..1473605 (-) 1068 WP_048801192.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07380 (NCTC10708_01471) amiD 1473614..1474540 (-) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  EL115_RS07385 (NCTC10708_01472) amiC 1474540..1476036 (-) 1497 WP_003070574.1 ABC transporter permease Regulator
  EL115_RS07390 (NCTC10708_01473) amiA3 1476400..1478379 (-) 1980 WP_126441667.1 peptide ABC transporter substrate-binding protein Regulator
  EL115_RS07395 (NCTC10708_01474) amiA3 1478575..1480551 (-) 1977 WP_003070579.1 peptide ABC transporter substrate-binding protein Regulator
  EL115_RS07400 (NCTC10708_01475) - 1480710..1481399 (-) 690 WP_172594021.1 B3/4 domain-containing protein -
  EL115_RS07405 (NCTC10708_01476) - 1481562..1483172 (-) 1611 WP_126441669.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73260.94 Da        Isoelectric Point: 7.8912

>NTDB_id=1120905 EL115_RS07390 WP_126441667.1 1476400..1478379(-) (amiA3) [Streptococcus milleri strain NCTC10708]
MKKSKIIALAAVSLLAAGALTACSGSKTSSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVELAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVSYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NVTYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDIIKPSSGESTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMIKWN
KERSKSNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1120905 EL115_RS07390 WP_126441667.1 1476400..1478379(-) (amiA3) [Streptococcus milleri strain NCTC10708]
ATGAAGAAAAGTAAAATCATTGCTTTAGCGGCTGTTAGCCTACTTGCAGCAGGAGCCTTAACGGCTTGTTCTGGCTCTAA
AACAAGTTCTAGCAACAAAACATTTTCATATGTTTATGAGCAAGATCCAGATAATTTGGATTATTTGACAACTGGGAAGG
CTTCTACTTCAAATATTACAAGTAATGTCATTGATGGACTCTTAGAAAATGACCGTTACGGAAATTTAATCCCTTCTGTG
GCAAAGGATTGGACGGTTTCCAAAGATGGCTTGACTTACACTTATAAACTTCGTAAAGGTGTCAAATGGTATACATCCGA
AGGTGAAGAGTATGCCGAAGTCAAAGCGCAAGACTTTGTGACTGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCTA
TTTATTTGGTGCAAGATTCAATCAAAGGCCTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCGGTTGATGATTATACGGTTCAATATACTCTGAATCGACCAGAAAGCTTTTGGAACTCAAAAACAACAATGGGCGT
TTTAGCGCCAGTTAATGCAGAATTTTTGAAATCAAAAGGAAATAAATTTGCACAAGCAACAGACCCATCTAGTCTTCTTT
ATAATGGACCATACTTGCTAAAATCTATCACTGCAAAATCATCTGTTGAATTGGCTAAAAATCCAAACTATTGGGATAAG
AAAAATGTACACATTGATAACATCAAATTGTCTTACTATGATGGTCAAGACCAAGATAAACTTGCTAAAGGATTTAGTGA
CGGTTCATTTACCAATGCAAAAGTATTTCCAACTAGTCCAAGTTATGCTTCCGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATCGATCGTCAATCTTACAATCATACATCAAAGACA
ACGGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGATGGTGCGACAAAGATGCTTCGTAATCTCTTTGTACCACCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTCAGCTACGATGAAAGTTGGAAAGATGTCAAC
TTAAATGATGCGCAAGACGGTCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCCAAAGCGAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTTCCAATCCACATTGACATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAAAATCTTGGCAAAGAAAATGTTGTGATTGACATTCAACAAATGTCTAAAGACGATGTAAAT
AATGTCACTTACTTTGCTGAATCTGCAGCTGCAGAAGATTGGGATCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGATCCATCTACCTATCTTGATATCATCAAACCTTCAAGCGGTGAAAGCACAAAGACCTATCTAGGATTTGATGCAGGTA
CGAATAACGCTGCAGCAGCACAAGTCGGTATGAACGAATATGAAAAGCTGTTGAACGAGGCTGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCGGCAGCCCAAGCTTGGTTGACTGATAATGCATTAGTTATTCCAACAACAACGCT
AACGGGTCGCCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGATTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.818

100

0.619
  amiA Streptococcus salivarius strain HSISS4

61.515

100

0.616
  amiA3 Streptococcus thermophilus LMG 18311

61.364

100

0.615

Multiple sequence alignment