Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EL115_RS07385 Genome accession   NZ_LR134307
Coordinates   1474540..1476036 (-) Length   498 a.a.
NCBI ID   WP_003070574.1    Uniprot ID   A0AAW7NWL0
Organism   Streptococcus milleri strain NCTC10708     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469540..1481036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS07360 (NCTC10708_01467) - 1469551..1470516 (+) 966 WP_126441663.1 LacI family DNA-binding transcriptional regulator -
  EL115_RS07365 (NCTC10708_01468) - 1470601..1471419 (-) 819 WP_126441665.1 Cof-type HAD-IIB family hydrolase -
  EL115_RS07370 (NCTC10708_01469) amiF 1471604..1472527 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  EL115_RS07375 (NCTC10708_01470) amiE 1472538..1473605 (-) 1068 WP_048801192.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07380 (NCTC10708_01471) amiD 1473614..1474540 (-) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  EL115_RS07385 (NCTC10708_01472) amiC 1474540..1476036 (-) 1497 WP_003070574.1 ABC transporter permease Regulator
  EL115_RS07390 (NCTC10708_01473) amiA3 1476400..1478379 (-) 1980 WP_126441667.1 peptide ABC transporter substrate-binding protein Regulator
  EL115_RS07395 (NCTC10708_01474) amiA3 1478575..1480551 (-) 1977 WP_003070579.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55887.12 Da        Isoelectric Point: 10.0448

>NTDB_id=1120904 EL115_RS07385 WP_003070574.1 1474540..1476036(-) (amiC) [Streptococcus milleri strain NCTC10708]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGISYPTYANLPVLQVISQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSALGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1120904 EL115_RS07385 WP_003070574.1 1474540..1476036(-) (amiC) [Streptococcus milleri strain NCTC10708]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTCAAGCAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCAGTTTATGAACGCGTTCTTG
GTTTCTATGGCAATTTGATTCAAATTGACCATACAGGTGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTAAGATTAAATCTAGGTATTTCTTATCCAACTTATGCGAATCTTCCTGTTT
TACAAGTTATTTCGCAAGGGCAAGGACAAACGAAAACTTCTGAAGTTCAATTCCCGACAGGTAAGAAAACTTCGTCTGTC
AACATTTATACAAGAACTTATAAATCTCCAAAACAAGCCGATGCGCGTGATGTTGCCAATTATGGAAAAGATGATCCATA
TACGGCAACAGAAAGTAACTACCAATATCCATCAATGATTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTGGCTTTAT
CTTACTTAATTGCTGTTCCGCTTGGATCTTACATGGCTCGCTTTAAGAATACATTGTTTGATAGTATTTCAACAGGAGCC
TTGACATTCTTGATGTCATTGCCAACCATCGCTTTGGTTTATATCATTCGGTTGATTGGTTCGGCTCTTGGATTGCCGGA
TTCCTTCCCTATTTTGGGAGCGGGAGATTGGCGTTCCTATGTTCTTCCGGCAGTTATTCTTGGGCTTTTGAGTGCGCCTT
GGACAGCTGTTTGGATTCGTCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCACGGGCAAAAGGCCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCCATGGTACCACTTGTATCCAGTATACCTGGTGCTATTAT
CGGAGTTATCACAGGTGCGACTTTGACCGAAACAATCTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTTA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTTTCTATTTTCGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.321

100

0.803
  amiC Streptococcus thermophilus LMG 18311

79.719

100

0.797
  amiC Streptococcus thermophilus LMD-9

79.518

100

0.795

Multiple sequence alignment