Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL115_RS07370 Genome accession   NZ_LR134307
Coordinates   1471604..1472527 (-) Length   307 a.a.
NCBI ID   WP_003070566.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC10708     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1466604..1477527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS07355 (NCTC10708_01466) - 1468116..1469570 (+) 1455 WP_126441661.1 sucrose-6-phosphate hydrolase -
  EL115_RS07360 (NCTC10708_01467) - 1469551..1470516 (+) 966 WP_126441663.1 LacI family DNA-binding transcriptional regulator -
  EL115_RS07365 (NCTC10708_01468) - 1470601..1471419 (-) 819 WP_126441665.1 Cof-type HAD-IIB family hydrolase -
  EL115_RS07370 (NCTC10708_01469) amiF 1471604..1472527 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  EL115_RS07375 (NCTC10708_01470) amiE 1472538..1473605 (-) 1068 WP_048801192.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07380 (NCTC10708_01471) amiD 1473614..1474540 (-) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  EL115_RS07385 (NCTC10708_01472) amiC 1474540..1476036 (-) 1497 WP_003070574.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34778.95 Da        Isoelectric Point: 6.3204

>NTDB_id=1120901 EL115_RS07370 WP_003070566.1 1471604..1472527(-) (amiF) [Streptococcus milleri strain NCTC10708]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIFFDGKRINGKKSKE
EESEVIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDAAQHDYSVDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1120901 EL115_RS07370 WP_003070566.1 1471604..1472527(-) (amiF) [Streptococcus milleri strain NCTC10708]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAAGGAAGCAAGAAATTTGTTGCTGTAAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCCGGCTCTGGTAAGACAACAATCGGTCGTG
CCATTATTGGTTTGAACGATACTAGCAAGGGAGATATCTTCTTTGATGGAAAGAGAATCAATGGTAAGAAATCAAAAGAG
GAAGAATCAGAAGTGATTCGCAAGATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTATATTATTTCAGAGGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAGGTGAAAGATATTA
TTCATGAGGTAGGGTTGTTATCAGAGCATTTGACCCGCTATCCGCATGAATTTTCTGGTGGTCAGCGTCAACGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAGCCAGATTTTGTGATTGCAGATGAGCCGATTTCAGCACTTGACGTCTCTGTGCGCGC
ACAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGCTTGACTTATCTTTTCATTGCCCATGATTTATCAGTTG
TACGTTTTATCTCAGACCGTATTGCTGTTATTTATAAGGGTGTGATTGTAGAAGTGGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACGCAGTCATTGCTATCTGCTGTCCCAATTCCAGACCCAATATTGGAGCGGAAGAAAGTATT
GAAGGTTTATGATGCTGCTCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCAGGACACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.255

99.674

0.87
  amiF Streptococcus salivarius strain HSISS4

87.255

99.674

0.87
  amiF Streptococcus thermophilus LMD-9

86.928

99.674

0.866

Multiple sequence alignment