Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL115_RS07380 Genome accession   NZ_LR134307
Coordinates   1473614..1474540 (-) Length   308 a.a.
NCBI ID   WP_003070571.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC10708     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468614..1479540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS07360 (NCTC10708_01467) - 1469551..1470516 (+) 966 WP_126441663.1 LacI family DNA-binding transcriptional regulator -
  EL115_RS07365 (NCTC10708_01468) - 1470601..1471419 (-) 819 WP_126441665.1 Cof-type HAD-IIB family hydrolase -
  EL115_RS07370 (NCTC10708_01469) amiF 1471604..1472527 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  EL115_RS07375 (NCTC10708_01470) amiE 1472538..1473605 (-) 1068 WP_048801192.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07380 (NCTC10708_01471) amiD 1473614..1474540 (-) 927 WP_003070571.1 oligopeptide ABC transporter permease OppC Regulator
  EL115_RS07385 (NCTC10708_01472) amiC 1474540..1476036 (-) 1497 WP_003070574.1 ABC transporter permease Regulator
  EL115_RS07390 (NCTC10708_01473) amiA3 1476400..1478379 (-) 1980 WP_126441667.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34523.57 Da        Isoelectric Point: 9.8589

>NTDB_id=1120903 EL115_RS07380 WP_003070571.1 1473614..1474540(-) (amiD) [Streptococcus milleri strain NCTC10708]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNSQYWFGTDSNGKSLFDGVWFGARNSILISVIATMINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTVKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1120903 EL115_RS07380 WP_003070571.1 1473614..1474540(-) (amiD) [Streptococcus milleri strain NCTC10708]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCGCCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAGTTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATTCCCAATATTGGTTTGGTACAGATAGTAACGGAAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCATGATTAACCTTGTGATTGGTATTGTTATTGGTGGTATCTGGGGAA
TTTCAAAGACTGTCGATCGTGTGATGATTGAGATTTATAATATCATTTCTAACATTCCACCGCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCTATGACCATCACTGGTTGGATTGGGATTGCTTACAA
TATTCGTATTCAAATTCTACGTTATCGTGATTTAGAGTATAACCTTGCCAGTCGCACTTTGGGAACACCGACTGTTAAAA
TCATTGTAAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTGACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCCTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCGGATTATTC
ACAAAATGTTACAACAAATGCATATCTTTTCTGGATTCCATTAACAACGTTGATTTTGGTTTCCCTTTCCCTATTCGTTG
TCGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.117

100

0.831
  amiD Streptococcus thermophilus LMD-9

83.117

100

0.831

Multiple sequence alignment