Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EL200_RS21155 Genome accession   NZ_LR134301
Coordinates   4549855..4551114 (-) Length   419 a.a.
NCBI ID   WP_057499451.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain NCTC13014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4544855..4556114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL200_RS21125 (NCTC13014_04209) - 4545001..4545477 (+) 477 WP_057499453.1 hypothetical protein -
  EL200_RS21130 (NCTC13014_04210) - 4545567..4546040 (+) 474 WP_049447485.1 hypothetical protein -
  EL200_RS21135 (NCTC13014_04211) - 4546049..4546726 (+) 678 WP_005410804.1 response regulator transcription factor -
  EL200_RS21140 (NCTC13014_04212) - 4546731..4548059 (+) 1329 WP_080354893.1 HAMP domain-containing sensor histidine kinase -
  EL200_RS21145 (NCTC13014_04213) coaE 4548360..4548971 (-) 612 WP_057499452.1 dephospho-CoA kinase -
  EL200_RS21150 (NCTC13014_04214) - 4548983..4549846 (-) 864 WP_049447482.1 A24 family peptidase -
  EL200_RS21155 (NCTC13014_04215) pilC 4549855..4551114 (-) 1260 WP_057499451.1 type II secretion system F family protein Machinery gene
  EL200_RS21160 (NCTC13014_04216) - 4551476..4551913 (+) 438 WP_057499450.1 pilin -
  EL200_RS21165 (NCTC13014_04217) - 4552012..4552887 (+) 876 WP_160320739.1 sterol desaturase family protein -
  EL200_RS21170 (NCTC13014_04218) - 4553019..4556075 (+) 3057 WP_057499448.1 fused MFS/spermidine synthase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45913.36 Da        Isoelectric Point: 10.2043

>NTDB_id=1120738 EL200_RS21155 WP_057499451.1 4549855..4551114(-) (pilC) [Stenotrophomonas maltophilia strain NCTC13014]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGIKMKGEQLAKNANLLRAELRKQGINPGQVKPKPKPLFGAAGKPVNAKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDAVRTDIEGGSSLHEAISRHPVQFDELYRNLVRAGESAGVLE
TVLDTIATYKENIEALKGKIKKALFYPAMVLVVAFLVSTILLVWVVPQFEEVFKSFGADLPAFTQMVVNLSRFMVSWWWL
MAIVLIGSVVAIAMTYRRSEKMQHTVDRLVLKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYGE
GVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1120738 EL200_RS21155 WP_057499451.1 4549855..4551114(-) (pilC) [Stenotrophomonas maltophilia strain NCTC13014]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGAATCAAGATGAAGGGCGAGCAGTTGGCCAAGAACGCCAATCTGCTGCGCGCCGAACTACGCAAGC
AGGGGATCAACCCCGGCCAGGTCAAGCCGAAGCCTAAGCCGTTGTTCGGCGCGGCCGGCAAGCCGGTGAATGCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTACCGATCGTCTCGGCATTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACGCAGTTCGCACCGACATCGAAGGCGGCTCATCGCTGCACGAAG
CGATCAGCCGCCACCCTGTCCAGTTCGACGAGCTCTACCGCAACCTGGTACGGGCTGGTGAAAGTGCCGGTGTGCTGGAA
ACGGTGCTGGATACCATCGCCACCTATAAAGAGAACATCGAGGCGTTGAAGGGCAAGATCAAGAAGGCCCTTTTCTACCC
GGCCATGGTGCTGGTGGTGGCCTTCCTGGTAAGCACCATCCTGCTGGTCTGGGTGGTGCCGCAGTTCGAGGAGGTCTTCA
AGAGCTTTGGTGCAGACCTCCCGGCCTTCACCCAGATGGTGGTCAACCTTTCCCGGTTCATGGTGTCCTGGTGGTGGCTG
ATGGCCATCGTCCTGATCGGATCGGTGGTCGCCATCGCAATGACCTACCGGCGCTCGGAGAAGATGCAGCACACGGTCGA
CCGGCTGGTGCTGAAGGTGCCGGTAATCGGGCAGATCATGCATAACAGCGCCATCGCCCGTTTCGCCCGGACCACGGCGG
TGACCTTCAAGGCCGGCGTGCCACTGGTAGAGGCCCTGGGCATCGTGGCCGGCGCCACCGGCAACAAGGTCTATGGCGAG
GGGGTGCTGCGGATGCGCGACGACGTCTCGGTCGGCTATCCGGTCAACATGGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGATGCCATGCTGTTCAAGGTGGCTGAATACTACG
AGCAGGAAGTGAACAATGCAGTGGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTC
GGTGGCTTGGTCATCGCGATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Legionella pneumophila strain ERS1305867

52.381

95.227

0.499
  pilC Acinetobacter baylyi ADP1

50.246

96.897

0.487
  pilC Acinetobacter baumannii D1279779

50.63

94.749

0.48
  pilG Neisseria gonorrhoeae MS11

42.821

94.749

0.406
  pilG Neisseria meningitidis 44/76-A

42.569

94.749

0.403
  pilC Vibrio campbellii strain DS40M4

40.898

95.704

0.391
  pilC Vibrio cholerae strain A1552

40.394

96.897

0.391

Multiple sequence alignment