Detailed information
Overview
| Name | comGF/cglF | Type | Machinery gene |
| Locus tag | EL096_RS07550 | Genome accession | NZ_LR134294 |
| Coordinates | 1401148..1401609 (-) | Length | 153 a.a. |
| NCBI ID | WP_000250544.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain NCTC12977 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1396148..1406609
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL096_RS07520 (NCTC12977_01464) | - | 1396452..1397276 (-) | 825 | WP_000727904.1 | membrane protein insertase YidC | - |
| EL096_RS07525 (NCTC12977_01465) | rnpA | 1397251..1397622 (-) | 372 | WP_000739246.1 | ribonuclease P protein component | - |
| EL096_RS12050 | - | 1397639..1397770 (-) | 132 | WP_000768904.1 | hypothetical protein | - |
| EL096_RS07530 (NCTC12977_01466) | - | 1397771..1398961 (-) | 1191 | WP_000167766.1 | acetate kinase | - |
| EL096_RS07535 (NCTC12977_01467) | comYH | 1399012..1399965 (-) | 954 | WP_050308921.1 | class I SAM-dependent methyltransferase | Machinery gene |
| EL096_RS07540 | - | 1400026..1400620 (-) | 595 | Protein_1404 | class I SAM-dependent methyltransferase | - |
| EL096_RS07545 (NCTC12977_01470) | comGG/cglG | 1400757..1401170 (-) | 414 | WP_050102600.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| EL096_RS07550 (NCTC12977_01471) | comGF/cglF | 1401148..1401609 (-) | 462 | WP_000250544.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| EL096_RS07555 (NCTC12977_01472) | comGE/cglE | 1401572..1401874 (-) | 303 | WP_000413380.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| EL096_RS07560 (NCTC12977_01473) | comGD/cglD | 1401837..1402241 (-) | 405 | WP_000588020.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL096_RS07565 (NCTC12977_01474) | comGC/cglC | 1402234..1402560 (-) | 327 | WP_000738632.1 | comG operon protein ComGC | Machinery gene |
| EL096_RS07570 (NCTC12977_01475) | comGB/cglB | 1402562..1403578 (-) | 1017 | WP_114880773.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL096_RS07575 (NCTC12977_01476) | comGA/cglA/cilD | 1403526..1404467 (-) | 942 | WP_000249549.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL096_RS07580 (NCTC12977_01477) | - | 1404543..1404908 (-) | 366 | WP_000286415.1 | DUF1033 family protein | - |
| EL096_RS07585 (NCTC12977_01478) | - | 1405059..1406117 (-) | 1059 | WP_000649468.1 | zinc-dependent alcohol dehydrogenase family protein | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 17821.32 Da Isoelectric Point: 6.4832
>NTDB_id=1120569 EL096_RS07550 WP_000250544.1 1401148..1401609(-) (comGF/cglF) [Streptococcus pneumoniae strain NCTC12977]
MVQNSCWQSKSHKVKAFTLLESLLALLVISGGLLLFQAMSQLLISEVRYQQQSEQKEWILFVDQLEAELDRSQFEKVEGN
RLYMKQDGKDIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEDNQLVHFRFQFQKGLEREFIYRVEKEES
MVQNSCWQSKSHKVKAFTLLESLLALLVISGGLLLFQAMSQLLISEVRYQQQSEQKEWILFVDQLEAELDRSQFEKVEGN
RLYMKQDGKDIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEDNQLVHFRFQFQKGLEREFIYRVEKEES
Nucleotide
Download Length: 462 bp
>NTDB_id=1120569 EL096_RS07550 WP_000250544.1 1401148..1401609(-) (comGF/cglF) [Streptococcus pneumoniae strain NCTC12977]
ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTAGAATCCCTGCTTGCCCTGCT
TGTCATCAGTGGGGGCTTACTCCTTTTTCAAGCTATGAGTCAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCG
AGCAAAAGGAGTGGATTTTGTTTGTGGACCAACTTGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAGGCAAT
CGCCTATACATGAAGCAAGATGGCAAGGACATCGCCATCGGTAAGTCAAAGTCAGACGATTTTCGTAAAACCGATGCTAG
TGGACGGGGGTATCAGCCTATGGTTTATGGCCTCAAATCAGCTCAGATTACAGAGGACAATCAACTGGTTCATTTTCGTT
TCCAGTTTCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGAAGAAAGTTAA
ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTAGAATCCCTGCTTGCCCTGCT
TGTCATCAGTGGGGGCTTACTCCTTTTTCAAGCTATGAGTCAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCG
AGCAAAAGGAGTGGATTTTGTTTGTGGACCAACTTGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAGGCAAT
CGCCTATACATGAAGCAAGATGGCAAGGACATCGCCATCGGTAAGTCAAAGTCAGACGATTTTCGTAAAACCGATGCTAG
TGGACGGGGGTATCAGCCTATGGTTTATGGCCTCAAATCAGCTCAGATTACAGAGGACAATCAACTGGTTCATTTTCGTT
TCCAGTTTCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGAAGAAAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGF/cglF | Streptococcus pneumoniae Rx1 |
93.464 |
100 |
0.935 |
| comGF/cglF | Streptococcus pneumoniae D39 |
93.464 |
100 |
0.935 |
| comGF/cglF | Streptococcus pneumoniae R6 |
93.464 |
100 |
0.935 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
93.464 |
100 |
0.935 |
| comGF/cglF | Streptococcus mitis SK321 |
92.157 |
100 |
0.922 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
90.85 |
100 |
0.909 |