Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGF/cglF   Type   Machinery gene
Locus tag   EL096_RS07550 Genome accession   NZ_LR134294
Coordinates   1401148..1401609 (-) Length   153 a.a.
NCBI ID   WP_000250544.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC12977     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1396148..1406609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL096_RS07520 (NCTC12977_01464) - 1396452..1397276 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EL096_RS07525 (NCTC12977_01465) rnpA 1397251..1397622 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EL096_RS12050 - 1397639..1397770 (-) 132 WP_000768904.1 hypothetical protein -
  EL096_RS07530 (NCTC12977_01466) - 1397771..1398961 (-) 1191 WP_000167766.1 acetate kinase -
  EL096_RS07535 (NCTC12977_01467) comYH 1399012..1399965 (-) 954 WP_050308921.1 class I SAM-dependent methyltransferase Machinery gene
  EL096_RS07540 - 1400026..1400620 (-) 595 Protein_1404 class I SAM-dependent methyltransferase -
  EL096_RS07545 (NCTC12977_01470) comGG/cglG 1400757..1401170 (-) 414 WP_050102600.1 competence type IV pilus minor pilin ComGG Machinery gene
  EL096_RS07550 (NCTC12977_01471) comGF/cglF 1401148..1401609 (-) 462 WP_000250544.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL096_RS07555 (NCTC12977_01472) comGE/cglE 1401572..1401874 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL096_RS07560 (NCTC12977_01473) comGD/cglD 1401837..1402241 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL096_RS07565 (NCTC12977_01474) comGC/cglC 1402234..1402560 (-) 327 WP_000738632.1 comG operon protein ComGC Machinery gene
  EL096_RS07570 (NCTC12977_01475) comGB/cglB 1402562..1403578 (-) 1017 WP_114880773.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL096_RS07575 (NCTC12977_01476) comGA/cglA/cilD 1403526..1404467 (-) 942 WP_000249549.1 competence type IV pilus ATPase ComGA Machinery gene
  EL096_RS07580 (NCTC12977_01477) - 1404543..1404908 (-) 366 WP_000286415.1 DUF1033 family protein -
  EL096_RS07585 (NCTC12977_01478) - 1405059..1406117 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 153 a.a.        Molecular weight: 17821.32 Da        Isoelectric Point: 6.4832

>NTDB_id=1120569 EL096_RS07550 WP_000250544.1 1401148..1401609(-) (comGF/cglF) [Streptococcus pneumoniae strain NCTC12977]
MVQNSCWQSKSHKVKAFTLLESLLALLVISGGLLLFQAMSQLLISEVRYQQQSEQKEWILFVDQLEAELDRSQFEKVEGN
RLYMKQDGKDIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEDNQLVHFRFQFQKGLEREFIYRVEKEES

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1120569 EL096_RS07550 WP_000250544.1 1401148..1401609(-) (comGF/cglF) [Streptococcus pneumoniae strain NCTC12977]
ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTAGAATCCCTGCTTGCCCTGCT
TGTCATCAGTGGGGGCTTACTCCTTTTTCAAGCTATGAGTCAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCG
AGCAAAAGGAGTGGATTTTGTTTGTGGACCAACTTGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAGGCAAT
CGCCTATACATGAAGCAAGATGGCAAGGACATCGCCATCGGTAAGTCAAAGTCAGACGATTTTCGTAAAACCGATGCTAG
TGGACGGGGGTATCAGCCTATGGTTTATGGCCTCAAATCAGCTCAGATTACAGAGGACAATCAACTGGTTCATTTTCGTT
TCCAGTTTCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGAAGAAAGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae Rx1

93.464

100

0.935

  comGF/cglF Streptococcus pneumoniae D39

93.464

100

0.935

  comGF/cglF Streptococcus pneumoniae R6

93.464

100

0.935

  comGF/cglF Streptococcus pneumoniae TIGR4

93.464

100

0.935

  comGF/cglF Streptococcus mitis SK321

92.157

100

0.922

  comGF/cglF Streptococcus mitis NCTC 12261

90.85

100

0.909


Multiple sequence alignment