Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   EL084_RS08700 Genome accession   NZ_LR134292
Coordinates   1733280..1733465 (+) Length   61 a.a.
NCBI ID   WP_117567419.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC10389     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1723847..1738964 1733280..1733465 within 0


Gene organization within MGE regions


Location: 1723847..1738964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS08645 (NCTC10389_01815) - 1723847..1724482 (-) 636 WP_115255553.1 transglycosylase SLT domain-containing protein -
  EL084_RS08650 (NCTC10389_01816) - 1724697..1725290 (-) 594 WP_004233655.1 LysM peptidoglycan-binding domain-containing protein -
  EL084_RS08655 (NCTC10389_01817) - 1725540..1726694 (-) 1155 WP_232007667.1 tyrosine-type recombinase/integrase -
  EL084_RS08660 (NCTC10389_01818) - 1726896..1727486 (-) 591 WP_126440830.1 helix-turn-helix domain-containing protein -
  EL084_RS08665 (NCTC10389_01819) - 1727649..1727837 (+) 189 WP_126440832.1 helix-turn-helix domain-containing protein -
  EL084_RS08670 (NCTC10389_01820) - 1728069..1728263 (+) 195 WP_126440834.1 hypothetical protein -
  EL084_RS09065 (NCTC10389_01821) - 1728277..1728417 (+) 141 WP_164557739.1 hypothetical protein -
  EL084_RS08675 (NCTC10389_01822) - 1728422..1728697 (+) 276 WP_232007668.1 MerR family transcriptional regulator -
  EL084_RS08680 (NCTC10389_01823) - 1728694..1729581 (+) 888 WP_126440836.1 primase alpha helix C-terminal domain-containing protein -
  EL084_RS08685 (NCTC10389_01824) - 1729594..1731240 (+) 1647 WP_232007669.1 phage/plasmid primase, P4 family -
  EL084_RS08690 (NCTC10389_01825) - 1731538..1731726 (+) 189 WP_126440838.1 hypothetical protein -
  EL084_RS08695 (NCTC10389_01826) - 1731728..1732168 (+) 441 WP_126440840.1 hypothetical protein -
  EL084_RS08700 (NCTC10389_01827) prx 1733280..1733465 (+) 186 WP_117567419.1 Paratox Regulator
  EL084_RS08705 (NCTC10389_01828) - 1733671..1734465 (-) 795 WP_126440842.1 energy-coupling factor transporter transmembrane component T family protein -
  EL084_RS08710 (NCTC10389_01829) - 1734458..1735300 (-) 843 WP_115255555.1 energy-coupling factor ABC transporter ATP-binding protein -
  EL084_RS08715 (NCTC10389_01830) - 1735276..1736118 (-) 843 WP_004233661.1 energy-coupling factor ABC transporter ATP-binding protein -
  EL084_RS08720 (NCTC10389_01831) pgsA 1736115..1736669 (-) 555 WP_004233663.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL084_RS08725 (NCTC10389_01832) - 1736679..1737608 (-) 930 WP_115255556.1 helix-turn-helix domain-containing protein -
  EL084_RS08730 (NCTC10389_01833) yfmH 1737675..1738964 (-) 1290 WP_126440844.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 7181.27 Da        Isoelectric Point: 4.4143

>NTDB_id=1120467 EL084_RS08700 WP_117567419.1 1733280..1733465(+) (prx) [Streptococcus equinus strain NCTC10389]
MLYYDEFKEAIERGFIKGDTVQIVRKNGIVFDYVLPNEPVKPHEVVTIEKVADVLEELKEW

Nucleotide


Download         Length: 186 bp        

>NTDB_id=1120467 EL084_RS08700 WP_117567419.1 1733280..1733465(+) (prx) [Streptococcus equinus strain NCTC10389]
ATGTTATATTATGATGAATTTAAAGAGGCAATCGAACGTGGTTTTATAAAGGGAGATACTGTTCAGATTGTTAGAAAAAA
TGGGATAGTATTTGATTATGTTCTCCCTAATGAACCAGTAAAGCCCCATGAGGTTGTCACCATTGAAAAGGTAGCAGACG
TTTTGGAAGAGCTAAAAGAATGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

67.797

96.721

0.656
  prx Streptococcus pyogenes MGAS8232

67.797

96.721

0.656
  prx Streptococcus pyogenes MGAS315

67.241

95.082

0.639
  prx Streptococcus pyogenes MGAS315

62.069

95.082

0.59
  prx Streptococcus pyogenes MGAS315

73.171

67.213

0.492
  prx Streptococcus pyogenes MGAS315

69.767

70.492

0.492
  prx Streptococcus pyogenes MGAS315

68.293

67.213

0.459

Multiple sequence alignment