Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   EL084_RS06255 Genome accession   NZ_LR134292
Coordinates   1274939..1275124 (-) Length   61 a.a.
NCBI ID   WP_126440532.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC10389     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1274939..1299864 1274939..1275124 within 0


Gene organization within MGE regions


Location: 1274939..1299864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS06255 (NCTC10389_01327) prx 1274939..1275124 (-) 186 WP_126440532.1 Paratox Regulator
  EL084_RS06260 (NCTC10389_01328) - 1275364..1275777 (-) 414 WP_126440534.1 DUF1492 domain-containing protein -
  EL084_RS06265 (NCTC10389_01329) - 1276645..1277085 (-) 441 WP_126440536.1 hypothetical protein -
  EL084_RS06270 (NCTC10389_01330) - 1277087..1277275 (-) 189 WP_061408373.1 hypothetical protein -
  EL084_RS09030 (NCTC10389_01331) - 1277295..1277450 (-) 156 WP_164557731.1 hypothetical protein -
  EL084_RS09080 (NCTC10389_01332) - 1277791..1279236 (-) 1446 WP_174222078.1 phage/plasmid primase, P4 family -
  EL084_RS09085 (NCTC10389_01333) - 1279324..1280211 (-) 888 WP_174222075.1 primase alpha helix C-terminal domain-containing protein -
  EL084_RS06280 (NCTC10389_01334) - 1280208..1280483 (-) 276 WP_048791247.1 MerR family transcriptional regulator -
  EL084_RS09035 (NCTC10389_01335) - 1280488..1280631 (-) 144 WP_164557732.1 hypothetical protein -
  EL084_RS06285 (NCTC10389_01336) - 1280645..1280839 (-) 195 WP_126440538.1 hypothetical protein -
  EL084_RS06290 (NCTC10389_01337) - 1281072..1281686 (-) 615 WP_126440540.1 Bro-N domain-containing protein -
  EL084_RS06295 (NCTC10389_01338) - 1281750..1281935 (-) 186 WP_074628914.1 hypothetical protein -
  EL084_RS09555 (NCTC10389_01339) - 1282106..1283011 (+) 906 WP_126440542.1 helix-turn-helix domain-containing protein -
  EL084_RS06305 (NCTC10389_01340) - 1283369..1284538 (+) 1170 WP_232007650.1 tyrosine-type recombinase/integrase -
  EL084_RS06310 (NCTC10389_01341) - 1284713..1286374 (-) 1662 WP_126440544.1 hypothetical protein -
  EL084_RS06315 (NCTC10389_01342) - 1286468..1287091 (-) 624 WP_126440546.1 SdpI family protein -
  EL084_RS06320 (NCTC10389_01343) - 1287078..1287359 (-) 282 WP_004232918.1 autorepressor SdpR family transcription factor -
  EL084_RS06325 (NCTC10389_01344) - 1287540..1288367 (+) 828 WP_115255397.1 exodeoxyribonuclease III -
  EL084_RS06330 (NCTC10389_01345) - 1288408..1288764 (-) 357 WP_044023337.1 arsenate reductase family protein -
  EL084_RS06335 (NCTC10389_01346) - 1288852..1290030 (-) 1179 WP_126440548.1 3-phosphoglycerate dehydrogenase family protein -
  EL084_RS06340 (NCTC10389_01347) serC 1290126..1291217 (-) 1092 WP_004232922.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  EL084_RS06345 (NCTC10389_01348) - 1291353..1291982 (+) 630 WP_004232924.1 copper homeostasis protein CutC -
  EL084_RS06350 (NCTC10389_01349) - 1292096..1292437 (-) 342 WP_004232925.1 P-II family nitrogen regulator -
  EL084_RS06355 (NCTC10389_01350) - 1292469..1293704 (-) 1236 WP_044023338.1 ammonium transporter -
  EL084_RS06360 (NCTC10389_01351) rsmI 1294026..1294889 (-) 864 WP_027968441.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EL084_RS06365 (NCTC10389_01352) yabA 1294902..1295222 (-) 321 WP_004232930.1 DNA replication initiation control protein YabA -
  EL084_RS06370 (NCTC10389_01353) - 1295215..1296015 (-) 801 WP_126440550.1 stage 0 sporulation family protein -
  EL084_RS06375 (NCTC10389_01354) - 1296012..1296887 (-) 876 WP_115255400.1 DNA polymerase III subunit delta' -
  EL084_RS06380 (NCTC10389_01355) tmk 1296901..1297533 (-) 633 WP_004232936.1 dTMP kinase -
  EL084_RS06385 (NCTC10389_01356) - 1297623..1298282 (-) 660 WP_126440552.1 CBS domain-containing protein -
  EL084_RS06390 (NCTC10389_01357) - 1298390..1299100 (-) 711 WP_126440554.1 ABC transporter ATP-binding protein -
  EL084_RS06395 (NCTC10389_01358) - 1299100..1299864 (-) 765 WP_115255402.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 7167.25 Da        Isoelectric Point: 4.4000

>NTDB_id=1120451 EL084_RS06255 WP_126440532.1 1274939..1275124(-) (prx) [Streptococcus equinus strain NCTC10389]
MLYYDEFKEAIDRGFIKGDTVQIVRKNGIVFDYVLPNEPVKPHEVVTIEKVADVLEELKEW

Nucleotide


Download         Length: 186 bp        

>NTDB_id=1120451 EL084_RS06255 WP_126440532.1 1274939..1275124(-) (prx) [Streptococcus equinus strain NCTC10389]
ATGTTATATTATGATGAATTTAAAGAGGCAATCGATAGAGGCTTTATAAAGGGAGATACTGTTCAGATTGTTAGAAAAAA
TGGGATAGTATTTGATTATGTTTTGCCTAATGAACCAGTAAAGCCCCATGAGGTGGTCACCATTGAAAAGGTAGCAGACG
TTTTGGAAGAGTTGAAAGAATGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

69.492

96.721

0.672
  prx Streptococcus pyogenes MGAS8232

69.492

96.721

0.672
  prx Streptococcus pyogenes MGAS315

68.966

95.082

0.656
  prx Streptococcus pyogenes MGAS315

63.793

95.082

0.607
  prx Streptococcus pyogenes MGAS315

75.61

67.213

0.508
  prx Streptococcus pyogenes MGAS315

72.093

70.492

0.508
  prx Streptococcus pyogenes MGAS315

70.732

67.213

0.475

Multiple sequence alignment