Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   EL087_RS09215 Genome accession   NZ_LR134288
Coordinates   1854565..1855755 (+) Length   396 a.a.
NCBI ID   WP_126408101.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC11169     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1849565..1860755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL087_RS09175 (NCTC11169_01888) - 1850047..1850904 (-) 858 WP_126408099.1 transposase -
  EL087_RS09190 (NCTC11169_01891) comE 1851373..1852122 (-) 750 WP_003029521.1 competence system response regulator transcription factor ComE Regulator
  EL087_RS09195 (NCTC11169_01892) comD/comD2 1852122..1853444 (-) 1323 WP_218969867.1 sensor histidine kinase Regulator
  EL087_RS09200 (NCTC11169_01893) - 1853465..1853611 (-) 147 WP_003029519.1 bacteriocin -
  EL087_RS09210 (NCTC11169_01895) rlmH 1853893..1854372 (-) 480 WP_049533214.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL087_RS09215 (NCTC11169_01896) htrA 1854565..1855755 (+) 1191 WP_126408101.1 S1C family serine protease Regulator
  EL087_RS09220 (NCTC11169_01897) spo0J 1855810..1856577 (+) 768 WP_126408103.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 396 a.a.        Molecular weight: 41664.61 Da        Isoelectric Point: 9.4264

>NTDB_id=1120287 EL087_RS09215 WP_126408101.1 1854565..1855755(+) (htrA) [Streptococcus milleri strain NCTC11169]
MKNSSNFTKKLLLLFMVLAIGFIGGLLGNLTSSKLSTNSSTTTKVNQVTTAYKNTNSTTQAVSKVKDAVVSVITYANNNS
QNSVFGNDDSNNNNDNSQQVASEGSGVIYKKDGKYAYLVTNTHVISGAKKVDIRLADGNKVPGEIVGSDTYSDISVVRIS
ADKVKSVAEFGDSSKLTVGETAIAIGSPLGSNYANTVTQGIISSLNRNVSLKSEDGQTISTQAIQTDTAINPGNSGGPLV
NIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDVINIINQLEANGTVTRPALGIQMIDITNLSSSDLSRLKLPSKITSGV
VVRSAQSGMPAEGKLQKYDVITKVDDKEISSTSDLQSALYKHSIGDNIKITFYRDGKETTNTIKLTKSTKDLDSNN

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=1120287 EL087_RS09215 WP_126408101.1 1854565..1855755(+) (htrA) [Streptococcus milleri strain NCTC11169]
ATGAAAAACTCTTCAAATTTCACAAAAAAATTGTTATTGCTTTTCATGGTCTTAGCTATAGGTTTTATTGGTGGTTTACT
TGGAAACTTAACTTCATCTAAATTATCAACAAATAGCTCTACAACGACTAAAGTTAATCAAGTTACTACTGCTTATAAAA
ATACAAATTCCACAACACAAGCTGTGAGTAAAGTAAAAGATGCTGTTGTATCCGTTATTACCTATGCTAATAATAATTCA
CAAAACAGTGTGTTTGGAAATGATGATTCAAATAATAACAATGATAATTCTCAACAAGTAGCTAGCGAAGGATCTGGAGT
TATTTATAAAAAAGATGGAAAATACGCTTACTTAGTAACCAATACCCACGTTATCAGTGGTGCTAAAAAAGTTGACATTC
GTTTAGCAGATGGTAATAAAGTTCCTGGAGAAATTGTAGGGTCAGATACTTATTCTGATATCTCCGTTGTTCGCATTAGT
GCTGATAAAGTAAAATCAGTTGCTGAATTTGGAGATTCTAGCAAATTGACTGTTGGTGAGACAGCTATTGCGATTGGAAG
TCCGCTCGGATCAAATTACGCTAACACTGTGACGCAAGGAATTATTTCTAGTTTAAATCGTAATGTTTCTCTAAAATCTG
AAGACGGACAAACGATTTCAACACAAGCTATTCAAACAGACACAGCTATCAACCCAGGGAACTCTGGTGGACCACTTGTG
AATATCCAAGGGCAAGTAATTGGTATTACTTCAAGTAAAATAGCTAGCAACGGCGGAACTTCGGTTGAAGGATTAGGATT
TGCTATTCCATCTAATGATGTTATAAACATTATTAACCAGTTAGAAGCAAATGGAACTGTTACACGACCAGCTCTAGGAA
TCCAAATGATTGACATCACTAATCTGTCTAGTTCAGATCTATCACGCTTAAAACTTCCATCAAAAATAACTAGTGGAGTT
GTCGTGCGTTCAGCTCAATCTGGAATGCCAGCTGAAGGAAAACTTCAAAAATATGATGTGATTACAAAAGTAGATGATAA
AGAAATTTCTTCAACAAGTGATTTACAATCTGCTTTATACAAACATTCAATTGGCGACAACATAAAAATCACTTTCTATC
GTGATGGAAAAGAAACTACTAATACCATTAAGCTTACAAAATCTACAAAAGATTTAGATTCAAATAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

75.312

100

0.763

  htrA Streptococcus mitis NCTC 12261

72.292

100

0.725

  htrA Streptococcus pneumoniae Rx1

72.04

100

0.722

  htrA Streptococcus pneumoniae D39

72.04

100

0.722

  htrA Streptococcus pneumoniae R6

72.04

100

0.722

  htrA Streptococcus pneumoniae TIGR4

72.04

100

0.722

  htrA Streptococcus mutans UA159

55.471

99.242

0.551


Multiple sequence alignment