Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EL100_RS06135 Genome accession   NZ_LR134285
Coordinates   1268922..1269512 (+) Length   196 a.a.
NCBI ID   WP_126404667.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263922..1274512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS06125 (NCTC3168_01261) mgtA 1265369..1268029 (+) 2661 WP_126404669.1 magnesium-translocating P-type ATPase -
  EL100_RS06130 (NCTC3168_01262) upp 1268130..1268759 (+) 630 WP_126404668.1 uracil phosphoribosyltransferase -
  EL100_RS06135 (NCTC3168_01263) clpP 1268922..1269512 (+) 591 WP_126404667.1 ATP-dependent Clp protease proteolytic subunit Regulator
  EL100_RS06140 (NCTC3168_01264) - 1269641..1269925 (+) 285 WP_126404666.1 DUF2129 domain-containing protein -
  EL100_RS06145 (NCTC3168_01265) - 1270020..1271177 (+) 1158 WP_126404665.1 ABC transporter substrate-binding protein -
  EL100_RS06150 (NCTC3168_01266) - 1271259..1272128 (+) 870 WP_009731472.1 branched-chain amino acid ABC transporter permease -
  EL100_RS06155 (NCTC3168_01267) - 1272132..1273079 (+) 948 WP_006595829.1 branched-chain amino acid ABC transporter permease -
  EL100_RS06160 (NCTC3168_01268) - 1273079..1273843 (+) 765 WP_126404664.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21503.63 Da        Isoelectric Point: 5.0054

>NTDB_id=1120180 EL100_RS06135 WP_126404667.1 1268922..1269512(+) (clpP) [Streptococcus australis strain NCTC3168]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGIAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAENSGQ
TIKKIHADAERDNWMTAEETLAYGFIDEIMTNNNIG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1120180 EL100_RS06135 WP_126404667.1 1268922..1269512(+) (clpP) [Streptococcus australis strain NCTC3168]
ATGATTCCAGTAGTAATTGAACAAACTAGTCGTGGTGAACGCTCATACGACATATACTCACGCCTCTTAAAAGACCGTAT
TATCATGGTGACAGGACCGGTAGAAGACCAAATGGCCAATTCGATTATTGCCCAATTGCTCTTCTTGGATGCCCAAGATA
ATACCAAAGATATCTATATGTATATCAATACGCCAGGAGGCTCTGTCTCTGCAGGTTTGGCAATCGTCGACACCATGAAC
TTTATCAAATCAGATGTCCAAACCATTGTTATGGGGATAGCAGCTTCAATGGGGACTGTGATTGCATCAAGTGGTACTAA
AGGCAAACGCTTCATGTTGCCAAATGCTGAGTACATGATCCACCAACCAATGGGTGGTACTGGTGGCGGTACCCAACAAA
CGGATATGGCCATTGCAGCAGAACACCTCTTGAAAACACGTCACAGATTGGAAAAAATCTTGGCAGAAAATTCAGGTCAA
ACCATCAAGAAAATCCACGCTGATGCGGAAAGAGATAATTGGATGACTGCAGAAGAAACGTTAGCTTATGGTTTCATCGA
TGAAATCATGACTAACAACAATATCGGATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

91.282

99.49

0.908
  clpP Streptococcus pyogenes JRS4

91.282

99.49

0.908
  clpP Streptococcus thermophilus LMG 18311

89.744

99.49

0.893
  clpP Streptococcus thermophilus LMD-9

89.744

99.49

0.893
  clpP Streptococcus pneumoniae R6

89.231

99.49

0.888
  clpP Streptococcus pneumoniae Rx1

89.231

99.49

0.888
  clpP Streptococcus pneumoniae D39

89.231

99.49

0.888
  clpP Streptococcus pneumoniae TIGR4

89.231

99.49

0.888
  clpP Streptococcus mutans UA159

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.59

99.49

0.832
  clpP Lactococcus lactis subsp. cremoris KW2

83.077

99.49

0.827
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

98.469

0.556

Multiple sequence alignment