Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL079_RS09445 Genome accession   NZ_LR134283
Coordinates   1898969..1900948 (+) Length   659 a.a.
NCBI ID   WP_018543580.1    Uniprot ID   A0A3S4QNH1
Organism   Streptococcus anginosus strain NCTC10713     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893969..1905948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS09430 (NCTC10713_01930) - 1894102..1895712 (+) 1611 WP_003031779.1 CTP synthase -
  EL079_RS09435 (NCTC10713_01931) - 1895946..1896629 (+) 684 WP_026248186.1 B3/4 domain-containing protein -
  EL079_RS09440 (NCTC10713_01932) amiA3 1896796..1898772 (+) 1977 WP_018543581.1 peptide ABC transporter substrate-binding protein Regulator
  EL079_RS09445 (NCTC10713_01933) amiA3 1898969..1900948 (+) 1980 WP_018543580.1 peptide ABC transporter substrate-binding protein Regulator
  EL079_RS09450 (NCTC10713_01934) amiC 1901324..1902820 (+) 1497 WP_003031736.1 ABC transporter permease Regulator
  EL079_RS09455 (NCTC10713_01935) amiD 1902820..1903746 (+) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator
  EL079_RS09460 (NCTC10713_01936) amiE 1903755..1904822 (+) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  EL079_RS09465 (NCTC10713_01937) amiF 1904833..1905756 (+) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73296.86 Da        Isoelectric Point: 7.3316

>NTDB_id=1120066 EL079_RS09445 WP_018543580.1 1898969..1900948(+) (amiA3) [Streptococcus anginosus strain NCTC10713]
MKKSKIITLAALALLATGALAACSNSKTSSGNKTFSYIYEQDPDNLNYLTTGKAATANLTSNVIDGLLENDRYGNLVPSM
AKDWTVSKDGLTYTYTLRKGVKWYTSEGEEYAEVKAQDFVTGLKYAADNKSDAIYLVQESVKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYSSVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKSFGELVKEKLIGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGESTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETNN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFSNAFAWSGNKGNSETILYKYLEIQDEPVTQNQYKKAMEKWN
KKRTESNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1120066 EL079_RS09445 WP_018543580.1 1898969..1900948(+) (amiA3) [Streptococcus anginosus strain NCTC10713]
ATGAAGAAAAGTAAAATCATTACCCTTGCAGCGCTAGCCTTGCTTGCAACAGGAGCTCTAGCAGCTTGTTCTAACTCTAA
AACAAGCTCGGGGAACAAAACATTCTCATATATTTATGAGCAAGATCCAGATAACCTGAACTATTTGACAACTGGGAAAG
CAGCTACTGCAAATCTTACCAGTAATGTCATTGACGGACTTTTGGAAAATGACCGTTATGGAAATCTAGTTCCTTCTATG
GCGAAGGATTGGACCGTCTCTAAAGATGGCTTGACTTATACTTATACACTTCGTAAGGGTGTGAAATGGTACACATCAGA
AGGCGAAGAGTATGCAGAAGTTAAGGCACAAGACTTTGTAACGGGCTTAAAATATGCTGCAGACAATAAATCTGATGCTA
TTTACTTGGTGCAAGAATCTGTTAAAGGCTTGGATGCTTACATGAAAGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCAGTCGATGATTACACAGTTCAATACACTCTTAATCGACCAGAAAGTTTTTGGAACTCAAAAACAACAATGGGCGT
TCTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAACAAATTTGCACAAGCAACAGATCCATCTAGTCTTCTTT
ATAATGGTCCATACTTGCTGAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTACTGGGATAAG
AAAAATGTGCACATTGATAACATCAAGTTGTCTTACTATGATGGTCAAGACCAGGACAAACTTGCTAAAGGATTTAGCGA
TGGTTCATTTACCAATGCTAAAGTATTTCCAACTAGCCCAAGTTATTCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCTCAAGATGCAACGACTTACCTAGTAGCTACAAATATTGATCGTCAATCTTACAATCACACTTCAAAGACA
ACAGATGCTCAAAAGACTTCTACTAAGAAAGCTTTGCTAAACAAGGATTTCCGTCAAGCGATTACCTTTGCATTTGACCG
CACAGCTTATGCATCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTCCGTAATCTCTTTGTACCACCAACATTTG
TTCAAACAGATGACAAGAGCTTTGGAGAATTGGTCAAAGAAAAATTGATTGGCTACGATGAAAGTTGGAAAGATGTCAAC
TTAAATGATGCGCAAGATGGGCTTTATAATCCAACTAAAGCTAAAGAAAAATTAGCGAAAGCGAAAGCAGCGCTTCAAGC
AGATGGCGTTCAATTTCCAATCCACATTGATATGCCAGTTGACCAAACAGCAACTAATAAAGTTCAACGTGTGCAATCAT
TGAAACAATCTATTGAAAAAAACCTTGGGAAAGAAAATGTTGTAATTGATATTCAACAAATGTCTAAAGACGACGTGAAT
AATATCACTTACTTTGCCGAATCTGCAGCGGCAGAAGATTGGGATCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGACCCATCTACCTATCTTGATGTTATCAAACCTTCAAGCGGTGAAAGCACTAAGACTTATCTAGGATTTGATGCAGGCA
CGAATAACGCTGCTGCAGCACAAGTTGGTATGAACGAATATGAAAAGTTGTTGAATGAGGCTGAAAAAGAAACCAACAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCACAAGCTTGGTTGACTGATAATGCATTGGTCATTCCAACAACAACACT
AACGGGTCGCCCAATTCTTTCTCGTACAGTACCATTTAGTAATGCCTTTGCTTGGTCAGGAAACAAGGGAAATAGTGAAA
CAATTCTCTATAAATACCTTGAAATCCAAGATGAGCCTGTGACTCAAAATCAATACAAGAAGGCAATGGAAAAATGGAAT
AAAAAGCGCACAGAGTCTAATAAAAAGGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4QNH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.455

100

0.605
  amiA3 Streptococcus thermophilus LMG 18311

59.848

100

0.599
  amiA Streptococcus salivarius strain HSISS4

59.697

100

0.598

Multiple sequence alignment