Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL079_RS09455 Genome accession   NZ_LR134283
Coordinates   1902820..1903746 (+) Length   308 a.a.
NCBI ID   WP_003031796.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897820..1908746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS09445 (NCTC10713_01933) amiA3 1898969..1900948 (+) 1980 WP_018543580.1 peptide ABC transporter substrate-binding protein Regulator
  EL079_RS09450 (NCTC10713_01934) amiC 1901324..1902820 (+) 1497 WP_003031736.1 ABC transporter permease Regulator
  EL079_RS09455 (NCTC10713_01935) amiD 1902820..1903746 (+) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator
  EL079_RS09460 (NCTC10713_01936) amiE 1903755..1904822 (+) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  EL079_RS09465 (NCTC10713_01937) amiF 1904833..1905756 (+) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  EL079_RS09470 (NCTC10713_01938) - 1905899..1906723 (+) 825 WP_003031797.1 Cof-type HAD-IIB family hydrolase -
  EL079_RS09475 (NCTC10713_01939) - 1906797..1907762 (-) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34461.48 Da        Isoelectric Point: 9.8589

>NTDB_id=1120068 EL079_RS09455 WP_003031796.1 1902820..1903746(+) (amiD) [Streptococcus anginosus strain NCTC10713]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTLKIIAKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1120068 EL079_RS09455 WP_003031796.1 1902820..1903746(+) (amiD) [Streptococcus anginosus strain NCTC10713]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCCCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATCGTCATTGTC
TTGACATACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACATTGGGAACGCCAACGCTTAAAA
TTATTGCGAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTTACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCTTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment