Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EL079_RS09450 Genome accession   NZ_LR134283
Coordinates   1901324..1902820 (+) Length   498 a.a.
NCBI ID   WP_003031736.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896324..1907820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS09440 (NCTC10713_01932) amiA3 1896796..1898772 (+) 1977 WP_018543581.1 peptide ABC transporter substrate-binding protein Regulator
  EL079_RS09445 (NCTC10713_01933) amiA3 1898969..1900948 (+) 1980 WP_018543580.1 peptide ABC transporter substrate-binding protein Regulator
  EL079_RS09450 (NCTC10713_01934) amiC 1901324..1902820 (+) 1497 WP_003031736.1 ABC transporter permease Regulator
  EL079_RS09455 (NCTC10713_01935) amiD 1902820..1903746 (+) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator
  EL079_RS09460 (NCTC10713_01936) amiE 1903755..1904822 (+) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  EL079_RS09465 (NCTC10713_01937) amiF 1904833..1905756 (+) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  EL079_RS09470 (NCTC10713_01938) - 1905899..1906723 (+) 825 WP_003031797.1 Cof-type HAD-IIB family hydrolase -
  EL079_RS09475 (NCTC10713_01939) - 1906797..1907762 (-) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55913.11 Da        Isoelectric Point: 10.0752

>NTDB_id=1120067 EL079_RS09450 WP_003031736.1 1901324..1902820(+) (amiC) [Streptococcus anginosus strain NCTC10713]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENSSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTKTSEFQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1120067 EL079_RS09450 WP_003031736.1 1901324..1902820(+) (amiC) [Streptococcus anginosus strain NCTC10713]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACGCTGACTTACACCATTAT
CTATACCATGGTGCCTAGGAAGTTGATTTTCAAACAGGACCCAAACTATAACAAAATAGCAACAACTCCTGATAAAAAGA
CCAATTACGAAAATACGATTTTTGAGCGCATGGGTTACATTGACTACTATGATACGAAGGAATTGCAAGAAAAAGCTAGT
AAAGAGAATTCCTCAGTAACAGTGGAGCCTACTAATGCAAATAAAAAAATCTATGAAGCATACATCAAAAAGCTAGGGCG
CGGTTGGAAATTGCAGCAATTTAAAGAAAGCAAGCAATTTTATGCAACTCGTGAAGTTCCAGTCTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGACCATACAGGTGCTGTGAAAGATGCTTCTAATCCGAATTTGAAGCGTTATATT
CGCATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATATTTATTATATTTCAATAG
TCAGTTTCCATTTATCCACCAAAATTTTGTAAGATTAAATCTAGGAACTTCTTATCCGACCTATGCTAATCTTCCTGTTT
TACAGGTTATTTCACAAGGGCAAGGTCAAACGAAGACATCAGAATTTCAATTTCCAACAGGAAAGAAAACATCATCTGTT
AATATTTATACACGTACATATAAGTCTCCAAAGCAAGCCGATGCACGCGATGTTGCTAATTACGGAAAAGATGATCCTTA
TACGGCGACAGAGAGCAATTATCAATATCCATCTATGATTGTGAGCTCTTCTATTGTTGGGTTGATTGGTTTGGCCTTGT
CATACTTAATCGCCGTTCCACTTGGATCTTATATGGCTCGCTTTAAGAATACATTGTTTGATAGTATTTCAACCGGTGCT
TTGACTTTCTTAATGTCACTGCCAACTATTGCCTTGGTTTATATCATTCGCTTGATTGGTTCAGCGATTGGCTTACCTGA
TTCATTCCCTATTTTGGGAGCAGGTGATTGGCGCTCTTATGTGTTGCCGGCAGTTATTCTTGGACTCTTGAGTGCGCCTT
GGACAGCAGTGTGGATTCGCCGTTATATGATTGACTTGCAATCACAAGATTTTGTTCGTTTTGCACGTGCAAAAGGTCTT
TCTGAAAAAGAAATTTCTAATAAACATATTTTCAAAAATGCTATGGTGCCACTTGTATCCAGTATACCTGGTGCTATTAT
CGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.522

100

0.805
  amiC Streptococcus thermophilus LMG 18311

79.92

100

0.799
  amiC Streptococcus thermophilus LMD-9

79.719

100

0.797

Multiple sequence alignment