Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL079_RS09440 Genome accession   NZ_LR134283
Coordinates   1896796..1898772 (+) Length   658 a.a.
NCBI ID   WP_018543581.1    Uniprot ID   A0AAN4P8U3
Organism   Streptococcus anginosus strain NCTC10713     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891796..1903772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS09420 (NCTC10713_01928) tig 1891812..1893095 (+) 1284 WP_003031722.1 trigger factor -
  EL079_RS09425 (NCTC10713_01929) rpoE 1893332..1893919 (+) 588 WP_003031757.1 DNA-directed RNA polymerase subunit delta -
  EL079_RS09430 (NCTC10713_01930) - 1894102..1895712 (+) 1611 WP_003031779.1 CTP synthase -
  EL079_RS09435 (NCTC10713_01931) - 1895946..1896629 (+) 684 WP_026248186.1 B3/4 domain-containing protein -
  EL079_RS09440 (NCTC10713_01932) amiA3 1896796..1898772 (+) 1977 WP_018543581.1 peptide ABC transporter substrate-binding protein Regulator
  EL079_RS09445 (NCTC10713_01933) amiA3 1898969..1900948 (+) 1980 WP_018543580.1 peptide ABC transporter substrate-binding protein Regulator
  EL079_RS09450 (NCTC10713_01934) amiC 1901324..1902820 (+) 1497 WP_003031736.1 ABC transporter permease Regulator
  EL079_RS09455 (NCTC10713_01935) amiD 1902820..1903746 (+) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72407.95 Da        Isoelectric Point: 8.5876

>NTDB_id=1120065 EL079_RS09440 WP_018543581.1 1896796..1898772(+) (amiA3) [Streptococcus anginosus strain NCTC10713]
MKKSKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSSDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDSIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGSGTAALALNIDRQSYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRESYAAQVNGKDGAATAIRNMFVPSNFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPTKAKAKFAKAKEALQAQGVKFPIHLDVPTVETSKNYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NVTYYAPNAAGEDWDISGAVGWNPDYQDPSTYLDILKSTSSDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRLQPFSGAFAQTGSKGSSTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKVESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1120065 EL079_RS09440 WP_018543581.1 1896796..1898772(+) (amiA3) [Streptococcus anginosus strain NCTC10713]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGCTAGCTCTTTTAACGTCTGGTCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCAGCTGAAACAAAATTTGGTTATGTGTATTCTAGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGGGAAGAATACGCAGAAGTTAAAGCGCAAGACTTTGTAACTGGTTTGAAACATGCTGCCGATAAAAAATCTGAGGCGC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAGCATTAAACTTGCTTACTATGATGGTCAAGACCAAGACTCATTGGCTCGTAATTTCAAAGA
TGGGGCATACTCATACGCACGCCTCTTCCCAACAAGTTCAAACTTTGCAACTTTTGAAAAACAATTCAAGGACAATATCT
ATACAGCAGAAGCAGGCTCTGGAACGGCTGCTTTAGCCCTTAATATTGACCGTCAATCTTACAACCATACGGCTAAGAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAGGCATTGTTGAACAAAGACTTCCGTCAAGCTTTGAACTTTGCACTTGACCG
CGAATCTTATGCAGCACAAGTAAATGGTAAAGATGGTGCTGCCACAGCAATCCGTAATATGTTTGTACCATCAAATTTTG
TTCAAGTTGGTGAAAAATCATTTAGTGATGTTGTAGAAGAAAAATTAGCAAGCTATGGCGATGACTGGAAGGGTGTCAAA
CTAGCTGATTCACAAAATGGCTTGTACAATCCAACAAAAGCAAAAGCAAAATTTGCAAAAGCAAAAGAAGCTTTGCAAGC
TCAAGGTGTGAAATTCCCAATCCATTTAGATGTTCCTACTGTAGAAACTTCTAAGAACTATGTTGCTCGTATGCAATCTT
TGAAACAGTCTGTTGAAAAAGTACTTGGTAAAGAAAATGTTGTCATGGACTTGAACATGATGTCAGAAGATGACTTTAAC
AACGTCACTTACTATGCTCCAAATGCAGCTGGAGAAGACTGGGATATCTCAGGCGCTGTTGGTTGGAATCCCGACTATCA
AGATCCATCTACTTATCTTGACATTTTGAAATCAACATCTTCTGATAATACGAAAACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACTGGTGCAGGAACATTTGTGTCACGTCTTCAACCATTCTCAGGTGCGTTTGCACAAACAGGTAGCAAAGGTAGCTCAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGTTGAATCTAACAAAAAAGCTCAAGACGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.34

100

0.644
  amiA3 Streptococcus thermophilus LMG 18311

64.188

100

0.643
  amiA Streptococcus salivarius strain HSISS4

63.222

100

0.632

Multiple sequence alignment