Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL079_RS09465 Genome accession   NZ_LR134283
Coordinates   1904833..1905756 (+) Length   307 a.a.
NCBI ID   WP_003031730.1    Uniprot ID   I0SFK8
Organism   Streptococcus anginosus strain NCTC10713     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899833..1910756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS09450 (NCTC10713_01934) amiC 1901324..1902820 (+) 1497 WP_003031736.1 ABC transporter permease Regulator
  EL079_RS09455 (NCTC10713_01935) amiD 1902820..1903746 (+) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator
  EL079_RS09460 (NCTC10713_01936) amiE 1903755..1904822 (+) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  EL079_RS09465 (NCTC10713_01937) amiF 1904833..1905756 (+) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  EL079_RS09470 (NCTC10713_01938) - 1905899..1906723 (+) 825 WP_003031797.1 Cof-type HAD-IIB family hydrolase -
  EL079_RS09475 (NCTC10713_01939) - 1906797..1907762 (-) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -
  EL079_RS09480 (NCTC10713_01940) - 1907743..1909200 (-) 1458 WP_003031721.1 sucrose-6-phosphate hydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34802.03 Da        Isoelectric Point: 6.4261

>NTDB_id=1120070 EL079_RS09465 WP_003031730.1 1904833..1905756(+) (amiF) [Streptococcus anginosus strain NCTC10713]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDAAQHDYSVDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1120070 EL079_RS09465 WP_003031730.1 1904833..1905756(+) (amiF) [Streptococcus anginosus strain NCTC10713]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATCAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCATTTATTTAAAGATGAAGAAGAACGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACACGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCGCTTGACGTCTCTGTGCGCGC
GCAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGCTTGACTTATCTTTTCATTGCCCATGATTTATCAGTTG
TACGTTTTATCTCAGACCGTATTGCTGTTATTTATAAGGGTGTGATTGTTGAAGTGGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACGCAGTCATTGCTATCTGCTGTCCCAATTCCAGACCCAATATTGGAGCGGAAGAAAGTATT
GAAGGTTTATGATGCTGCTCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCAGGACACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873

Multiple sequence alignment