Detailed information NTG1120057

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: EL079_RS08815
• Genome accession: NZ_LR134283
• Coordinates: 1768970..1769398 (+)
• Length: 142 a.a.
• NCBI ID: WP_050791305.1
• Uniprot ID: -
• Organism: Streptococcus anginosus strain NCTC10713
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1763970..1774398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL079_RS08785 (NCTC10713_01797)	-	1764424..1764783 (+)	360	WP_003028467.1	MerR family transcriptional regulator	-
EL079_RS08790 (NCTC10713_01798)	glnA	1764822..1766168 (+)	1347	WP_003032299.1	type I glutamate--ammonia ligase	-
EL079_RS08795 (NCTC10713_01799)	-	1766356..1766721 (+)	366	WP_003032307.1	DUF1033 family protein	-
EL079_RS08800 (NCTC10713_01800)	comYA	1766791..1767732 (+)	942	WP_003032308.1	competence type IV pilus ATPase ComGA	Machinery gene
EL079_RS08805 (NCTC10713_01801)	comYB	1767674..1768696 (+)	1023	WP_037582505.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL079_RS08810 (NCTC10713_01802)	comYC	1768693..1769010 (+)	318	WP_003026997.1	competence type IV pilus major pilin ComGC	Machinery gene
EL079_RS08815 (NCTC10713_01803)	comYD	1768970..1769398 (+)	429	WP_050791305.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL079_RS08820 (NCTC10713_01804)	comGE/cglE	1769370..1769663 (+)	294	WP_003032294.1	competence type IV pilus minor pilin ComGE	Machinery gene
EL079_RS08825 (NCTC10713_01805)	comGF/cglF	1769647..1770084 (+)	438	WP_003032293.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL079_RS08830 (NCTC10713_01806)	comGG	1770065..1770391 (+)	327	WP_018543596.1	competence type IV pilus minor pilin ComGG	-
EL079_RS08835 (NCTC10713_01807)	comYH	1770476..1771429 (+)	954	WP_003032282.1	class I SAM-dependent methyltransferase	Machinery gene
EL079_RS08840 (NCTC10713_01808)	-	1771476..1772675 (+)	1200	WP_003032291.1	acetate kinase	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 16299.75 Da
• Isoelectric Point: 10.1961

>NTDB_id=1120057 EL079_RS08815 WP_050791305.1 1768970..1769398(+) (comYD) [Streptococcus anginosus strain NCTC10713]
MRNIQKKLVLLQIKGFTLLESLLTLFITSFLLLAVSGSVRSSFEQVEEQIFFLEFEHFYRESQKLSSSAQSQLDMNFSRE
RISNGYNYLAVPRSIQAPEDLTLHFDKAGGNSSLGKIVFQTKKQTVTYQLYLGNGKFKKTTR

Nucleotide

• Length: 429 bp

>NTDB_id=1120057 EL079_RS08815 WP_050791305.1 1768970..1769398(+) (comYD) [Streptococcus anginosus strain NCTC10713]
ATGCGAAACATACAAAAGAAGCTCGTTCTGTTGCAGATTAAGGGATTTACGCTTTTGGAAAGTTTGCTGACATTATTTAT
AACGAGTTTCTTATTGCTTGCGGTGTCGGGCTCTGTTCGTTCTTCTTTTGAACAGGTGGAAGAGCAGATTTTCTTTCTGG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGCTCAGCTCAAAGTCAGCTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAACTATTTGGCAGTTCCTCGCTCAATTCAAGCTCCAGAAGATTTGACGCTTCATTTTGATAA
GGCAGGTGGTAATTCATCGCTCGGAAAGATTGTCTTTCAGACGAAAAAGCAGACAGTTACGTATCAATTATATCTAGGAA
ATGGGAAATTTAAGAAAACAACGCGTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	64.885	92.254	0.599
comGD/cglD	Streptococcus mitis NCTC 12261	57.364	90.845	0.521
comGD/cglD	Streptococcus mitis SK321	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae Rx1	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae D39	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae R6	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae TIGR4	55.906	89.437	0.5
comYD	Streptococcus mutans UA140	53.846	91.549	0.493
comYD	Streptococcus mutans UA159	53.846	91.549	0.493