Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   EL078_RS02775 Genome accession   NZ_LR134282
Coordinates   510698..510883 (+) Length   61 a.a.
NCBI ID   WP_126437671.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 498712..513956 510698..510883 within 0


Gene organization within MGE regions


Location: 498712..513956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS02675 (NCTC8140_00537) - 498712..499875 (-) 1164 WP_126437657.1 tyrosine-type recombinase/integrase -
  EL078_RS02680 (NCTC8140_00538) - 500189..501154 (-) 966 WP_126437658.1 DUF3644 domain-containing protein -
  EL078_RS02685 (NCTC8140_00539) - 501190..501762 (-) 573 WP_074601417.1 helix-turn-helix domain-containing protein -
  EL078_RS02690 (NCTC8140_00540) - 501917..502102 (+) 186 WP_074601419.1 hypothetical protein -
  EL078_RS02695 (NCTC8140_00541) - 502361..502663 (+) 303 WP_126437659.1 hypothetical protein -
  EL078_RS02700 (NCTC8140_00542) - 502680..502874 (+) 195 WP_126437660.1 hypothetical protein -
  EL078_RS02705 (NCTC8140_00543) - 502890..503123 (+) 234 WP_126437661.1 hypothetical protein -
  EL078_RS02710 (NCTC8140_00544) - 503125..503391 (+) 267 WP_039696601.1 hypothetical protein -
  EL078_RS02715 (NCTC8140_00545) - 503405..504256 (+) 852 WP_126437662.1 DnaD domain protein -
  EL078_RS02720 (NCTC8140_00546) - 504276..505124 (+) 849 WP_411756605.1 ATP-binding protein -
  EL078_RS02725 (NCTC8140_00547) - 505241..505816 (+) 576 WP_126437664.1 hypothetical protein -
  EL078_RS02730 (NCTC8140_00548) - 505809..506192 (+) 384 WP_126437665.1 hypothetical protein -
  EL078_RS02735 (NCTC8140_00549) - 506329..506733 (+) 405 WP_039696605.1 hypothetical protein -
  EL078_RS02740 (NCTC8140_00550) - 506812..507012 (+) 201 WP_126437666.1 CPCC family cysteine-rich protein -
  EL078_RS02745 (NCTC8140_00551) - 507108..507521 (+) 414 WP_164554303.1 DUF1492 domain-containing protein -
  EL078_RS02750 (NCTC8140_00552) - 507735..507938 (+) 204 WP_126437668.1 CPCC family cysteine-rich protein -
  EL078_RS02760 (NCTC8140_00553) - 508487..508699 (+) 213 WP_052698786.1 hypothetical protein -
  EL078_RS02765 (NCTC8140_00554) - 509707..510222 (+) 516 WP_126437669.1 hypothetical protein -
  EL078_RS02770 (NCTC8140_00555) - 510431..510622 (+) 192 WP_126437670.1 helix-turn-helix domain-containing protein -
  EL078_RS02775 (NCTC8140_00556) prx 510698..510883 (+) 186 WP_126437671.1 Paratox Regulator
  EL078_RS02780 (NCTC8140_00557) ftsA 511243..512610 (+) 1368 WP_021141859.1 cell division protein FtsA -
  EL078_RS02785 (NCTC8140_00558) ftsZ 512631..513956 (+) 1326 WP_024344231.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 7234.29 Da        Isoelectric Point: 4.2558

>NTDB_id=1119968 EL078_RS02775 WP_126437671.1 510698..510883(+) (prx) [Streptococcus equinus strain NCTC8140]
MLYYDELKEAIDRGFIKGDTVQIVRKNGIVFDYVLPNEPIKPYEVVTTEKVADVWEELKEW

Nucleotide


Download         Length: 186 bp        

>NTDB_id=1119968 EL078_RS02775 WP_126437671.1 510698..510883(+) (prx) [Streptococcus equinus strain NCTC8140]
ATGCTATATTATGATGAACTAAAAGAGGCAATCGATAGAGGCTTTATAAAAGGTGATACTGTTCAAATTGTGAGAAAGAA
TGGGATAGTATTTGATTATGTTCTCCCTAATGAGCCTATAAAACCTTACGAGGTGGTTACCACTGAAAAGGTAGCAGACG
TTTGGGAAGAGCTAAAAGAATGGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

67.797

96.721

0.656
  prx Streptococcus pyogenes MGAS8232

65.517

95.082

0.623
  prx Streptococcus pyogenes MGAS315

63.793

95.082

0.607
  prx Streptococcus pyogenes MGAS315

60.345

95.082

0.574
  prx Streptococcus pyogenes MGAS315

69.048

68.852

0.475
  prx Streptococcus pyogenes MGAS315

70.732

67.213

0.475
  prx Streptococcus pyogenes MGAS315

68.293

67.213

0.459

Multiple sequence alignment