Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL076_RS04475 Genome accession   NZ_LR134275
Coordinates   876319..877158 (+) Length   279 a.a.
NCBI ID   WP_003093081.1    Uniprot ID   A0AAP2QV18
Organism   Streptococcus vestibularis strain NCTC12167     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 871319..882158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS04445 (NCTC12167_00885) - 871739..872266 (+) 528 WP_126429402.1 ECF transporter S component -
  EL076_RS04450 (NCTC12167_00886) - 872286..872801 (+) 516 WP_126429404.1 transcription repressor NadR -
  EL076_RS04455 (NCTC12167_00887) - 872896..873585 (+) 690 WP_003092569.1 XRE family transcriptional regulator -
  EL076_RS04460 (NCTC12167_00888) ylqF 873714..874568 (+) 855 WP_126429406.1 ribosome biogenesis GTPase YlqF -
  EL076_RS04465 (NCTC12167_00889) - 874555..875325 (+) 771 WP_003097285.1 ribonuclease HII -
  EL076_RS04470 (NCTC12167_00890) - 875332..876252 (+) 921 WP_003097283.1 ROK family protein -
  EL076_RS04475 (NCTC12167_00891) dprA 876319..877158 (+) 840 WP_003093081.1 DNA-processing protein DprA Machinery gene
  EL076_RS04480 (NCTC12167_00892) topA 877326..879458 (+) 2133 WP_003092737.1 type I DNA topoisomerase -
  EL076_RS04485 (NCTC12167_00893) - 879640..880317 (+) 678 WP_003097278.1 ABC transporter ATP-binding protein -
  EL076_RS04490 (NCTC12167_00894) - 880319..881047 (+) 729 WP_037621492.1 lantibiotic ABC transporter permease -
  EL076_RS04495 (NCTC12167_00895) - 881010..881681 (+) 672 WP_232009682.1 nisG -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31312.29 Da        Isoelectric Point: 8.6572

>NTDB_id=1119889 EL076_RS04475 WP_003093081.1 876319..877158(+) (dprA) [Streptococcus vestibularis strain NCTC12167]
MNNFELFKLKAAGLTNLNILNILDYQKTKDRKLSLRDMAVVSKSKNAVLFMEKYKSLDIKQLKEQFERFPTLSIFDKEYP
IELKHTYNPPVLLYYQGNLDLLIKPKLAVVGARNCSETGKQSVRKIVSELGNQFTIVSGLARGIDTCAHMESLKNKGNTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLTEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1119889 EL076_RS04475 WP_003093081.1 876319..877158(+) (dprA) [Streptococcus vestibularis strain NCTC12167]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTGAATATCTTAAATATTTTGGACTATCAAAA
GACTAAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCAGTACTCTTTATGGAAAAGT
ATAAGAGTTTAGATATTAAGCAACTCAAAGAACAGTTTGAACGTTTTCCTACGTTATCGATTTTTGATAAAGAATATCCC
ATTGAGCTGAAGCACACCTATAATCCTCCTGTTCTCCTTTATTATCAGGGAAATCTTGATTTACTGATTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAATTGTTCTGAAACAGGCAAGCAGTCTGTTCGAAAAATTGTTAGTGAACTTGGTAATCAGT
TTACTATTGTGAGTGGATTGGCGCGTGGAATTGATACTTGTGCGCATATGGAGTCCTTGAAAAATAAGGGAAACACTATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGACTATATGGCTAAAAACCATTT
AGTTCTTACAGAATATGGACCGGGGGAACAGCCTCTCAAGTACCATTTTCCTGAACGAAATCGGATTATTTCTGGATTGT
GTCAAGGAGTTATGGTCGTAGAAGCTAAGCTTCGCTCGGGAAGCCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGACGGATGCCATCACTTGATTCAGGAGGGTGCAAAGTG
CATCACGACAGGGTTTGACATTCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

73.118

100

0.731
  dprA/cilB/dalA Streptococcus mitis SK321

62.95

99.642

0.627
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

62.95

99.642

0.627
  dprA/cilB/dalA Streptococcus pneumoniae D39

62.95

99.642

0.627
  dprA/cilB/dalA Streptococcus pneumoniae R6

62.95

99.642

0.627
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

62.95

99.642

0.627
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

62.59

99.642

0.624
  dprA Lactococcus lactis subsp. cremoris KW2

59.353

99.642

0.591
  dprA Acinetobacter baylyi ADP1

41.473

92.473

0.384
  dprA Latilactobacillus sakei subsp. sakei 23K

40.541

92.832

0.376
  dprA Bacillus subtilis subsp. subtilis str. 168

48.571

75.269

0.366

Multiple sequence alignment