Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   EL077_RS00695 Genome accession   NZ_LR134273
Coordinates   118939..119973 (+) Length   344 a.a.
NCBI ID   WP_337660760.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain NCTC12091     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113939..124973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL077_RS00680 (NCTC12091_00135) - 115236..117239 (+) 2004 WP_126436206.1 DUF1430 domain-containing protein -
  EL077_RS00685 - 117241..117912 (+) 672 Protein_101 ATP-binding cassette domain-containing protein -
  EL077_RS00690 (NCTC12091_00138) comGA/cglA 118068..119006 (+) 939 WP_126436208.1 competence type IV pilus ATPase ComGA Machinery gene
  EL077_RS00695 (NCTC12091_00139) comYB 118939..119973 (+) 1035 WP_337660760.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL077_RS00700 (NCTC12091_00140) comGC/cglC 119974..120297 (+) 324 WP_014622142.1 competence type IV pilus major pilin ComGC Machinery gene
  EL077_RS00705 (NCTC12091_00141) comGD 120275..120700 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  EL077_RS00710 (NCTC12091_00142) comGE 120705..120947 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  EL077_RS00715 (NCTC12091_00143) comYF 120934..121368 (+) 435 WP_012677237.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL077_RS00720 (NCTC12091_00144) comGG 121346..121708 (+) 363 WP_037580629.1 competence type IV pilus minor pilin ComGG -
  EL077_RS00725 (NCTC12091_00145) comYH 121770..122723 (+) 954 WP_037580627.1 class I SAM-dependent methyltransferase Machinery gene
  EL077_RS00730 (NCTC12091_00146) - 122783..123985 (+) 1203 WP_126436211.1 acetate kinase -
  EL077_RS09825 (NCTC12091_00147) - 124354..124725 (-) 372 WP_337660761.1 hypothetical protein -
  EL077_RS09830 (NCTC12091_00148) - 124729..124968 (-) 240 WP_337660762.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39406.64 Da        Isoelectric Point: 9.4455

>NTDB_id=1119735 EL077_RS00695 WP_337660760.1 118939..119973(+) (comYB) [Streptococcus equi subsp. equi strain NCTC12091]
MISFLQRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGALLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLL
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1119735 EL077_RS00695 WP_337660760.1 118939..119973(+) (comYB) [Streptococcus equi subsp. equi strain NCTC12091]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCTAGGTCCTG
TAGCAGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGAGCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTGATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.572

98.547

0.538
  comYB Streptococcus mutans UA159

54.572

98.547

0.538
  comYB Streptococcus gordonii str. Challis substr. CH1

52.353

98.837

0.517
  comGB/cglB Streptococcus mitis SK321

48.649

96.802

0.471
  comGB/cglB Streptococcus mitis NCTC 12261

48.503

97.093

0.471
  comGB/cglB Streptococcus pneumoniae Rx1

48.348

96.802

0.468
  comGB/cglB Streptococcus pneumoniae D39

48.348

96.802

0.468
  comGB/cglB Streptococcus pneumoniae R6

48.348

96.802

0.468
  comGB/cglB Streptococcus pneumoniae TIGR4

48.348

96.802

0.468
  comGB Lactococcus lactis subsp. cremoris KW2

46.018

98.547

0.453

Multiple sequence alignment