Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   EL081_RS09825 Genome accession   NZ_LR134266
Coordinates   1960999..1962360 (-) Length   453 a.a.
NCBI ID   WP_126404998.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955999..1967360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS09810 (NCTC3166_01936) - 1956486..1957154 (+) 669 WP_126404995.1 DUF4947 domain-containing protein -
  EL081_RS09815 (NCTC3166_01937) - 1957220..1960015 (-) 2796 WP_126404996.1 YhgE/Pip domain-containing protein -
  EL081_RS09820 (NCTC3166_01938) - 1960151..1960687 (+) 537 WP_126404997.1 TetR-like C-terminal domain-containing protein -
  EL081_RS09825 (NCTC3166_01939) comB 1960999..1962360 (-) 1362 WP_126404998.1 bacteriocin secretion accessory protein Regulator
  EL081_RS09830 (NCTC3166_01940) comA 1962388..1964541 (-) 2154 WP_126404999.1 peptide cleavage/export ABC transporter ComA Regulator
  EL081_RS09835 (NCTC3166_01941) rpsD 1964824..1965435 (-) 612 WP_003009175.1 30S ribosomal protein S4 -
  EL081_RS09840 (NCTC3166_01942) - 1966030..1966302 (-) 273 WP_006595358.1 Veg family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50850.36 Da        Isoelectric Point: 6.1287

>NTDB_id=1119591 EL081_RS09825 WP_126404998.1 1960999..1962360(-) (comB) [Streptococcus viridans strain NCTC3166]
MMNEKYFESAEFYQKRFHNFASLWVVPCFLLLLFIVGFSVFAKKEVTLSSRGTIEATRVVDQIQSTSNSPIQVNHLKENK
EIKKGEILVEYQEDQEKQQGMSLTQQLDLLKKQEEQLKLLKTSIETGESQFTGNEHFGYDQLFKDYQQQIAILQAQAHQQ
NATIASQNASASSSQAEIGQAIQDQEKRLADYRSLKSALLEERSLDATHPLYSLYQSYAQQPHGEENAQAQASFISQLDS
QIQQLEASISNYRIQYAGSGSQQAFSTSLDSQIASLKAQQLSKVGQDLLLLSQQIADLDSKLKTQETLLQKTRILAKDEG
VIHLNDETKGASIVAEGTPLAQVYPLIQKEKEVKIVTYIPSKDIATIHVGDRIRFSTQGSKQKPITLEARISSIASSATR
TEQGNFFKIEGVLRLKDYEAKLLRYGLEGKCVLITGEKSYFSFFVDQFLGAGN

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1119591 EL081_RS09825 WP_126404998.1 1960999..1962360(-) (comB) [Streptococcus viridans strain NCTC3166]
ATGATGAACGAAAAATATTTTGAAAGTGCAGAATTCTATCAGAAACGTTTCCATAATTTTGCTAGTTTGTGGGTAGTCCC
TTGTTTTCTTTTACTACTGTTTATTGTAGGCTTCTCTGTCTTTGCCAAGAAGGAAGTAACCTTGTCTAGTCGTGGGACGA
TTGAAGCTACGCGCGTGGTGGACCAAATCCAGTCAACGAGTAATTCTCCCATTCAAGTCAACCATTTGAAGGAAAATAAA
GAGATTAAGAAGGGCGAAATTTTGGTAGAATACCAGGAGGATCAGGAAAAACAACAAGGAATGAGCTTGACGCAACAGCT
AGATCTCTTGAAGAAACAGGAGGAACAATTAAAACTGTTGAAAACGAGCATTGAGACCGGGGAGAGTCAGTTTACAGGAA
ATGAGCATTTTGGGTATGATCAGCTGTTTAAGGATTACCAGCAACAGATAGCGATTCTCCAAGCGCAAGCCCATCAACAA
AATGCGACTATTGCTTCTCAAAATGCCAGTGCAAGTTCCAGTCAAGCAGAAATTGGCCAAGCTATCCAAGACCAGGAGAA
GCGATTAGCTGATTACCGTAGTCTAAAATCAGCTCTCCTAGAGGAAAGAAGTCTGGATGCGACTCATCCACTTTACTCCC
TCTACCAGAGTTACGCTCAGCAACCACATGGAGAAGAAAACGCTCAAGCACAAGCTTCTTTTATCAGTCAACTGGATAGT
CAAATCCAGCAGCTAGAAGCGAGTATTTCTAATTATCGAATTCAATATGCGGGATCCGGAAGTCAACAAGCTTTTTCGAC
CAGTTTAGATAGTCAAATAGCCTCGCTGAAAGCTCAACAGCTAAGTAAGGTTGGACAAGATCTGTTGCTTCTTTCTCAGC
AAATCGCAGATTTAGACAGTAAGTTAAAAACACAAGAAACTCTTCTTCAGAAGACTCGGATTCTAGCCAAGGATGAAGGG
GTAATTCATTTGAATGATGAAACAAAAGGAGCGAGTATTGTAGCAGAAGGCACTCCTTTGGCACAAGTTTATCCACTCAT
TCAGAAAGAAAAAGAAGTCAAGATTGTTACCTATATTCCTTCAAAAGATATAGCTACGATTCATGTGGGAGATCGGATTC
GCTTTAGCACGCAGGGAAGTAAACAAAAACCAATTACGCTAGAGGCCCGTATTAGCTCCATTGCTTCGAGTGCCACTCGG
ACAGAACAGGGGAATTTTTTCAAAATCGAGGGAGTTCTTCGTCTCAAGGATTATGAGGCAAAACTTCTACGGTACGGATT
GGAAGGGAAGTGTGTTCTGATCACAGGAGAAAAATCTTACTTTAGTTTCTTTGTGGATCAATTTTTAGGAGCGGGGAACT
AA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(317-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus gordonii str. Challis substr. CH1

53.982

99.779

0.539
  comB Streptococcus pneumoniae Rx1

49.554

98.896

0.49
  comB Streptococcus pneumoniae D39

49.554

98.896

0.49
  comB Streptococcus mitis SK321

49.554

98.896

0.49
  comB Streptococcus pneumoniae R6

49.554

98.896

0.49
  comB Streptococcus mitis NCTC 12261

49.554

98.896

0.49
  comB Streptococcus pneumoniae TIGR4

48.884

98.896

0.483

Multiple sequence alignment