Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EL081_RS09830 Genome accession   NZ_LR134266
Coordinates   1962388..1964541 (-) Length   717 a.a.
NCBI ID   WP_126404999.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1957388..1969541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS09820 (NCTC3166_01938) - 1960151..1960687 (+) 537 WP_126404997.1 TetR-like C-terminal domain-containing protein -
  EL081_RS09825 (NCTC3166_01939) comB 1960999..1962360 (-) 1362 WP_126404998.1 bacteriocin secretion accessory protein Regulator
  EL081_RS09830 (NCTC3166_01940) comA 1962388..1964541 (-) 2154 WP_126404999.1 peptide cleavage/export ABC transporter ComA Regulator
  EL081_RS09835 (NCTC3166_01941) rpsD 1964824..1965435 (-) 612 WP_003009175.1 30S ribosomal protein S4 -
  EL081_RS09840 (NCTC3166_01942) - 1966030..1966302 (-) 273 WP_006595358.1 Veg family protein -
  EL081_RS09845 (NCTC3166_01943) dnaB 1966306..1967661 (-) 1356 WP_006596978.1 replicative DNA helicase -
  EL081_RS09850 (NCTC3166_01944) rplI 1967686..1968138 (-) 453 WP_126405000.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80831.34 Da        Isoelectric Point: 7.8655

>NTDB_id=1119592 EL081_RS09830 WP_126404999.1 1962388..1964541(-) (comA) [Streptococcus viridans strain NCTC3166]
MGFKKKHYRQQVDMRDCGVAALAMVFGYYGSYYSLASLREKAKTTADGTTALGLVKVAEELGFETRAFRADRTLFDLEGV
TYPLIVHVIKDGRLPHYYVVYKKDKKHLYIADPDPNVKMTKLTIEEFEKEWTGIVIALAPTPAYQPSKEKKNGLLDFVPL
LFKQRQLVLHIVLATLLVTLINIVGSYYLQSIIDTYVPDQMKQTLSVISLGLIVVYILQQVLTYAQDYLLLVLGQRLSID
VILSYIKHVFQLPMSFFATRRTGEVVSRFTDANRIIDALASTLLSIFLDLSIVLILSVVLFSQNAHLFFLTILLLPIYAV
IIFAFMKPFERLNNETMEANSVLSSSIIEDINGIETIKSLTSERSRYQKIDTEFVDYLKKSFAMSKAESLQKGLKHLAQL
ILNVLVLWMGAHLVMKQELSLGQLITYNTLLVYFTGPLENLINLQTKLQAARVANTRLNEVYLIDSEFAEKKPLQERETL
DGDLVFEGVDYKYGFGANVITDINLKIKKGSKVSFVGISGSGKTTLAKMMVNFYKPNKGTIRLGGTDIQQVDKTLLRQQI
NYLPQQPYVFNGTILENLLLGAREGTSQEDILRAVEIAGIREDIERMPLNYQTELTTDGMGISGGQRQRIALARALLTDA
PILILDEATSSLDILTEKKIVDSLMALDKTIIFIAHRLTIAERSEKVFLLDQGCLKEEGSHEELLKKNGYYSHLVTC

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=1119592 EL081_RS09830 WP_126404999.1 1962388..1964541(-) (comA) [Streptococcus viridans strain NCTC3166]
ATGGGATTTAAGAAAAAACATTATCGCCAACAAGTTGACATGAGAGATTGCGGTGTTGCAGCTTTAGCCATGGTCTTTGG
TTACTATGGATCATACTATTCTTTAGCTAGTCTGAGGGAGAAGGCAAAAACGACTGCAGATGGAACGACCGCCTTAGGTC
TGGTCAAGGTGGCTGAGGAGTTGGGATTTGAGACACGCGCCTTCCGAGCAGACCGCACACTTTTTGACTTGGAAGGAGTG
ACCTATCCATTGATTGTCCACGTGATTAAGGATGGGCGTCTCCCTCACTATTACGTAGTCTATAAGAAAGATAAAAAGCA
TCTTTACATAGCAGATCCAGATCCAAATGTAAAGATGACCAAATTGACGATCGAAGAGTTTGAAAAGGAATGGACAGGGA
TTGTCATTGCCCTGGCCCCGACTCCAGCCTATCAACCGAGTAAAGAAAAGAAAAATGGGCTCCTAGACTTTGTCCCTCTT
TTGTTTAAACAGCGACAATTAGTCCTTCATATTGTTCTTGCAACGTTATTGGTAACCCTTATCAATATTGTTGGTTCTTA
CTACCTACAATCGATTATTGATACCTATGTGCCTGATCAGATGAAGCAGACCCTAAGTGTGATTTCACTAGGTTTGATCG
TGGTTTACATCTTACAGCAGGTTCTGACCTATGCGCAAGATTACTTGCTTCTTGTTTTAGGTCAACGTTTGTCTATTGAT
GTCATACTGTCCTATATTAAGCATGTTTTTCAGTTGCCTATGAGTTTCTTTGCAACTCGACGGACAGGAGAAGTGGTGTC
GCGGTTTACAGATGCCAACCGGATTATCGATGCTCTGGCTAGTACGCTACTTTCAATCTTTTTGGATCTGTCCATAGTCC
TGATTTTATCAGTGGTCCTGTTTAGCCAAAATGCTCATCTCTTTTTCTTGACCATTCTCTTACTGCCGATTTATGCAGTC
ATTATTTTTGCCTTTATGAAGCCTTTTGAGCGCTTAAATAATGAAACAATGGAAGCCAATAGTGTCTTGTCTTCTTCTAT
TATCGAAGATATCAATGGGATTGAAACCATCAAGTCTCTTACCAGTGAGCGTAGTCGTTATCAAAAGATTGACACAGAAT
TTGTGGACTATCTCAAGAAGTCCTTTGCCATGAGCAAGGCGGAGAGTCTGCAAAAGGGGCTCAAGCACTTGGCCCAATTG
ATTTTGAATGTCTTGGTCTTGTGGATGGGGGCTCATTTGGTCATGAAGCAAGAATTGAGTTTGGGTCAGCTGATTACCTA
CAATACTCTCCTTGTTTATTTCACAGGGCCTCTAGAGAACTTGATCAACCTCCAAACAAAACTTCAAGCAGCCCGAGTGG
CCAATACCCGTCTGAATGAAGTCTATTTGATAGACTCTGAGTTCGCAGAGAAGAAGCCTCTTCAAGAGCGTGAGACTCTC
GATGGTGATCTGGTTTTTGAGGGAGTAGACTACAAGTACGGTTTTGGAGCCAATGTTATAACAGATATTAACTTAAAGAT
CAAAAAAGGGAGCAAGGTAAGTTTTGTCGGTATTTCCGGTTCTGGAAAAACCACGCTAGCGAAGATGATGGTGAATTTCT
ACAAACCCAATAAAGGGACGATTCGGCTGGGAGGGACGGATATCCAGCAAGTGGATAAGACCTTGCTCCGCCAGCAAATC
AATTATTTACCCCAGCAGCCCTATGTCTTTAATGGTACGATTTTAGAGAACTTGTTACTGGGAGCGCGGGAAGGAACCAG
TCAGGAAGATATTTTGCGCGCTGTTGAAATAGCAGGAATTCGAGAAGACATTGAGCGCATGCCCCTCAATTACCAAACGG
AATTGACTACGGATGGCATGGGAATTTCTGGTGGACAACGGCAGCGGATTGCCTTGGCGCGTGCCTTATTAACGGATGCT
CCGATTCTGATTCTGGATGAAGCGACCAGTAGCCTGGATATTTTGACGGAGAAGAAAATTGTGGACAGCTTGATGGCCTT
AGATAAAACCATTATCTTTATTGCCCACCGGTTAACGATTGCAGAGCGTTCTGAAAAAGTCTTCCTCCTGGACCAAGGTT
GTCTTAAGGAGGAAGGAAGTCATGAAGAACTGCTGAAAAAGAATGGCTATTACAGTCATTTGGTTACTTGTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(171-438)

ABC transporter (ABC_tran)

(501-650)

Peptidase C39 family (Peptidase_C39)

(6-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

76.987

100

0.77
  comA Streptococcus mitis NCTC 12261

75.174

100

0.752
  comA Streptococcus pneumoniae Rx1

75.035

100

0.75
  comA Streptococcus pneumoniae D39

75.035

100

0.75
  comA Streptococcus pneumoniae R6

75.035

100

0.75
  comA Streptococcus mitis SK321

75.035

100

0.75
  comA Streptococcus pneumoniae TIGR4

74.616

100

0.746
  comA/nlmT Streptococcus mutans UA159

63.357

99.721

0.632

Multiple sequence alignment