Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EL095_RS06490 Genome accession   NZ_LR134264
Coordinates   1387260..1387589 (+) Length   109 a.a.
NCBI ID   WP_002481038.1    Uniprot ID   -
Organism   Staphylococcus simulans strain NCTC7944     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382260..1392589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL095_RS06460 (SAMEA3500277_01326) - 1383028..1383228 (+) 201 WP_002481044.1 YqgQ family protein -
  EL095_RS06465 (SAMEA3500277_01327) - 1383228..1384214 (+) 987 WP_002481043.1 ROK family glucokinase -
  EL095_RS06470 (SAMEA3500277_01328) - 1384214..1384543 (+) 330 WP_002481042.1 MTH1187 family thiamine-binding protein -
  EL095_RS06475 (SAMEA3500277_01329) - 1384543..1385166 (+) 624 WP_057510470.1 MBL fold metallo-hydrolase -
  EL095_RS06480 (SAMEA3500277_01330) comGA 1385223..1386197 (+) 975 WP_002481040.1 competence type IV pilus ATPase ComGA Machinery gene
  EL095_RS06485 (SAMEA3500277_01331) comGB 1386169..1387242 (+) 1074 WP_103364376.1 competence type IV pilus assembly protein ComGB -
  EL095_RS06490 (SAMEA3500277_01332) comGC 1387260..1387589 (+) 330 WP_002481038.1 competence type IV pilus major pilin ComGC Machinery gene
  EL095_RS06495 (SAMEA3500277_01333) comGD 1387592..1388017 (+) 426 WP_002481037.1 competence type IV pilus minor pilin ComGD -
  EL095_RS06500 (SAMEA3500277_01334) comGF 1388236..1388730 (+) 495 WP_002481036.1 competence type IV pilus minor pilin ComGF -
  EL095_RS06505 - 1388895..1389434 (+) 540 WP_002481034.1 shikimate kinase -
  EL095_RS06510 (SAMEA3500277_01337) gcvT 1389613..1390707 (+) 1095 WP_023015155.1 glycine cleavage system aminomethyltransferase GcvT -
  EL095_RS06515 (SAMEA3500277_01338) gcvPA 1390729..1392078 (+) 1350 WP_103364374.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12084.23 Da        Isoelectric Point: 9.6828

>NTDB_id=1119474 EL095_RS06490 WP_002481038.1 1387260..1387589(+) (comGC) [Staphylococcus simulans strain NCTC7944]
MKNLVKNLKHKYLRAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSIDELV
SEGFLKEGQKTCKSGKTITISDGEATVSQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1119474 EL095_RS06490 WP_002481038.1 1387260..1387589(+) (comGC) [Staphylococcus simulans strain NCTC7944]
ATGAAAAACCTTGTCAAAAACTTAAAACATAAATATTTACGAGCATTTACTTTACTAGAAATGCTTTTAGTTCTTTTAGT
TATCAGTGTTTTATTGATACTCATTATTCCAAATATCGCTAAACAATCTAAGCATGTTCAAGATACTGGGTGTGAAGCAC
AACAAAAAATGGTGAATAGCCAAATAGAAGCTTTTACTCTCAATAAAAATAGAGCGCCTTCTTCAATCGATGAATTAGTT
AGTGAAGGATTTTTAAAAGAAGGTCAAAAAACATGTAAATCCGGAAAAACGATTACAATCAGCGACGGCGAAGCTACCGT
TAGTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

72.632

87.156

0.633
  comGC Staphylococcus aureus MW2

72.632

87.156

0.633
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

96.33

0.404
  comGC Bacillus subtilis subsp. subtilis str. 168

42.708

88.073

0.376
  comGC/cglC Streptococcus mitis SK321

46.067

81.651

0.376
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

81.651

0.376
  comGC/cglC Streptococcus pneumoniae D39

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae R6

44.944

81.651

0.367

Multiple sequence alignment