Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EL101_RS07045 Genome accession   NZ_LR134263
Coordinates   1477051..1477374 (+) Length   107 a.a.
NCBI ID   WP_096541451.1    Uniprot ID   -
Organism   Staphylococcus delphini strain NCTC12225     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472051..1482374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL101_RS07015 (NCTC12225_01465) - 1472732..1472935 (+) 204 WP_096596999.1 YqgQ family protein -
  EL101_RS07020 (NCTC12225_01466) - 1472932..1473918 (+) 987 WP_096596997.1 ROK family glucokinase -
  EL101_RS07025 (NCTC12225_01467) - 1473919..1474230 (+) 312 WP_019165228.1 MTH1187 family thiamine-binding protein -
  EL101_RS07030 (NCTC12225_01468) - 1474243..1474872 (+) 630 WP_096596995.1 MBL fold metallo-hydrolase -
  EL101_RS07035 (NCTC12225_01469) comGA 1475028..1476002 (+) 975 WP_019165230.1 competence type IV pilus ATPase ComGA Machinery gene
  EL101_RS07040 (NCTC12225_01470) comGB 1475971..1477038 (+) 1068 WP_096596993.1 competence type IV pilus assembly protein ComGB -
  EL101_RS07045 (NCTC12225_01471) comGC 1477051..1477374 (+) 324 WP_096541451.1 competence type IV pilus major pilin ComGC Machinery gene
  EL101_RS07050 (NCTC12225_01472) comGD 1477352..1477792 (+) 441 WP_096596991.1 competence type IV pilus minor pilin ComGD -
  EL101_RS07060 (NCTC12225_01473) - 1478003..1478488 (+) 486 WP_119529678.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EL101_RS07065 - 1478652..1479179 (+) 528 WP_096596987.1 shikimate kinase -
  EL101_RS07070 (NCTC12225_01476) gcvT 1479337..1480428 (+) 1092 WP_096596985.1 glycine cleavage system aminomethyltransferase GcvT -
  EL101_RS07075 (NCTC12225_01477) gcvPA 1480441..1481790 (+) 1350 WP_096596983.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11987.11 Da        Isoelectric Point: 8.5012

>NTDB_id=1119445 EL101_RS07045 WP_096541451.1 1477051..1477374(+) (comGC) [Staphylococcus delphini strain NCTC12225]
MIQQLKSKFNQKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEDITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1119445 EL101_RS07045 WP_096541451.1 1477051..1477374(+) (comGC) [Staphylococcus delphini strain NCTC12225]
ATGATTCAACAACTTAAATCAAAATTCAACCAAAAGAAAGGATTTACTTTAATTGAAATGTTACTTGTGCTGTTAATTAT
TAGTGTGCTATTGATACTCATTATCCCGAATATTGCTAAACAGTCAGATCATATCCAAAAAACGGGCTGTGCAGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAGAGTCAAAAAACATGCAAATCAGGTGAAGATATCACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

74.737

88.785

0.664
  comGC Staphylococcus aureus MW2

74.737

88.785

0.664
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

85.981

0.383
  comYC Streptococcus suis isolate S10

53.947

71.028

0.383
  comGC/cglC Streptococcus mitis SK321

43.478

85.981

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

47.561

76.636

0.364
  comGC/cglC Streptococcus pneumoniae TIGR4

42.391

85.981

0.364

Multiple sequence alignment