Detailed information NTG0111835

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: NJ8700_RS10430
• Genome accession: NZ_CP009230
• Coordinates: 2193487..2194146 (+)
• Length: 219 a.a.
• NCBI ID: WP_005704497.1
• Uniprot ID: -
• Organism: Aggregatibacter aphrophilus NJ8700
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2188487..2199146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NJ8700_RS10400 (NJ8700_10620)	gorA	2188592..2189962 (+)	1371	WP_005701807.1	glutathione-disulfide reductase	-
NJ8700_RS10405 (NJ8700_10625)	crp	2190083..2190727 (-)	645	WP_005701806.1	cAMP-activated global transcriptional regulator CRP	Regulator
NJ8700_RS10410 (NJ8700_10630)	-	2190765..2190983 (-)	219	WP_005701805.1	YheU family protein	-
NJ8700_RS10415 (NJ8700_10635)	slmA	2191007..2191591 (-)	585	Protein_2025	nucleoid occlusion factor SlmA	-
NJ8700_RS10420 (NJ8700_10640)	dut	2191606..2192061 (-)	456	WP_005701802.1	dUTP diphosphatase	-
NJ8700_RS10425 (NJ8700_10645)	coaBC	2192110..2193309 (-)	1200	WP_012771967.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
NJ8700_RS10430 (NJ8700_10655)	radC	2193487..2194146 (+)	660	WP_005704497.1	DNA repair protein RadC	Machinery gene
NJ8700_RS10435 (NJ8700_10660)	rpmB	2194357..2194593 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
NJ8700_RS10440 (NJ8700_10665)	rpmG	2194605..2194775 (+)	171	WP_005544948.1	50S ribosomal protein L33	-
NJ8700_RS10445 (NJ8700_10670)	mutM	2194845..2195660 (+)	816	WP_005701798.1	DNA-formamidopyrimidine glycosylase	-
NJ8700_RS10450 (NJ8700_10675)	-	2195657..2196718 (-)	1062	WP_005701796.1	glycosyltransferase family 9 protein	-
NJ8700_RS10455 (NJ8700_10680)	-	2196723..2197751 (-)	1029	WP_005701795.1	glycosyltransferase family 9 protein	-
NJ8700_RS10460 (NJ8700_10685)	-	2197748..2198434 (-)	687	WP_005701794.1	glycosyltransferase family 25 protein	-
NJ8700_RS10465 (NJ8700_10690)	rpmE	2198495..2198707 (-)	213	WP_005701793.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24771.82 Da
• Isoelectric Point: 6.3764

>NTDB_id=111835 NJ8700_RS10430 WP_005704497.1 2193487..2194146(+) (radC) [Aggregatibacter aphrophilus NJ8700]
MNEPLMPREKLLQYGAAALSDEELLAIFLRTGIKDCPVMQLSHNVLQHFGSLRGLITASQKQFCAVKGIGVTQFIQLQAC
TEMTRRYLLAELKEEHCFTSSDAVKMYLQTELEGLEREVFLVLFLDTQHRLIKQENLFLGTINQAMVYPREIIKEALACN
AAALILAHNHPSGVAEPSFSDRNITQKIKQAAELMEIRVLDHFVIGRGCYFSFAEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=111835 NJ8700_RS10430 WP_005704497.1 2193487..2194146(+) (radC) [Aggregatibacter aphrophilus NJ8700]
ATGAATGAACCATTAATGCCAAGAGAAAAATTGTTACAATACGGCGCGGCGGCGTTAAGCGATGAGGAGCTATTGGCCAT
TTTTTTACGTACGGGCATTAAGGATTGCCCCGTCATGCAATTGTCCCACAATGTGTTGCAACATTTTGGCTCTTTACGCG
GCTTAATTACGGCAAGTCAAAAGCAATTTTGTGCCGTAAAAGGCATTGGTGTTACCCAGTTTATTCAGTTACAGGCTTGT
ACCGAAATGACTAGGCGTTATTTGCTGGCGGAATTAAAGGAAGAACATTGTTTCACTTCAAGTGATGCGGTGAAAATGTA
TTTGCAAACCGAGCTGGAGGGTTTGGAACGAGAAGTCTTTTTAGTGTTGTTTTTGGATACGCAACATCGTTTAATCAAGC
AGGAAAACCTTTTCCTTGGCACCATCAATCAGGCCATGGTGTATCCGCGGGAGATCATTAAAGAAGCCTTAGCCTGCAAT
GCAGCGGCGCTTATTTTGGCGCATAATCATCCTTCAGGTGTGGCTGAACCGAGCTTTTCCGATCGAAATATTACACAAAA
AATCAAGCAGGCGGCTGAGTTAATGGAGATTCGGGTATTGGATCATTTTGTGATTGGTCGCGGCTGTTATTTTTCCTTTG
CGGAACAAAATCTTCTCTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (98-217)

• UPF0758 N-terminal (UPF0758_N) (6-73)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	67.431	99.543	0.671
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	38.889	98.63	0.384
radC	Streptococcus gordonii str. Challis substr. CH1	37.788	99.087	0.374
radC	Streptococcus pneumoniae TIGR4	37.85	97.717	0.37
radC	Streptococcus pneumoniae R6	37.383	97.717	0.365
radC	Streptococcus pneumoniae D39	37.383	97.717	0.365