Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ELZ51_RS01850 Genome accession   NZ_LR134094
Coordinates   338475..340445 (+) Length   656 a.a.
NCBI ID   WP_126425839.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 333475..345445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS01835 (NCTC4669_00390) - 334488..335669 (-) 1182 WP_126425835.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ELZ51_RS01840 - 335856..336713 (+) 858 Protein_316 DDE-type integrase/transposase/recombinase -
  ELZ51_RS01845 (NCTC4669_00392) pbp3 336907..338145 (-) 1239 WP_126425837.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ELZ51_RS01850 (NCTC4669_00393) amiA 338475..340445 (+) 1971 WP_126425839.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ51_RS01855 (NCTC4669_00394) amiC 340511..342013 (+) 1503 WP_126425841.1 ABC transporter permease Regulator
  ELZ51_RS01860 (NCTC4669_00395) amiD 342013..342939 (+) 927 WP_126425843.1 oligopeptide ABC transporter permease OppC Regulator
  ELZ51_RS01865 (NCTC4669_00396) amiE 342948..344018 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  ELZ51_RS01870 (NCTC4669_00397) amiF 344011..344934 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72148.45 Da        Isoelectric Point: 4.9534

>NTDB_id=1118261 ELZ51_RS01850 WP_126425839.1 338475..340445(+) (amiA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDAKSEALYVVEDSIKNLKAYQNGEVDFKEV
GIKALDEKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGLESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMQDGYIRHLSWNLNRTSFNNTKK
DAAQQEDGKKALNNKDFRQAIQFGFDRGSFQAQTVGEDAKTKALRNMLVPPTFVTIGKNDFGSEVEKEIAKLGDEWKNIN
LADAQDGLYNPEKAKVEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
SQGFYAKTPEQQDYDIIASWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDIVAAAGLDTYQTLLDEAAAITDDN
DARYTAYAKAQAYLLDDAVDIPVVSTGGSPRVSKVVPFSGAFAWAEAKGSLSYKGMKLQDKPVTTKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1118261 ELZ51_RS01850 WP_126425839.1 338475..340445(+) (amiA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGAAGAAAAGTAGATGGTTAGCAACTTTAGGTGTTGCTGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAATATGTGTTTGTTAATGACCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTAGATGGTCTTTTGGAAAATGACGAGTATGGTAACTTGGTA
CCATCGCTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTATACTCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGACTTTGTAACTGGTCTAAAACATGCGGTTGATGCTAAAT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAATTTGAAAGCTTACCAAAATGGTGAGGTTGATTTCAAAGAAGTC
GGTATTAAAGCGCTTGATGAAAAAACGGTTCAATACACTTTAAACAAACCTGAAAGTTACTGGAATTCGAAAACAACATA
TAGTGTACTTTTCCCAGTTAATGCGAAATTCTTGAAGTCAAAAGGTAAAGATTTTGGAACAACTGACCCATCATCAATCC
TTGTTAACGGAGCTTATTTCTTAAGTGCCTTCACTTCAAAATCATCCATGGAATTTCATAAAAATGAAAATTACTGGGAT
GCTAAGAATGTTGGACTAGAATCTGTTAAATTGACTTACTCAGACGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGTGTTGCACGACTTTACCCAAATGATCCAACTTATAAATCAGCTAAGAAAAATTACGCTGATAACA
TTACTTACGGTATGCAAGACGGTTATATTCGTCACTTATCTTGGAATTTAAATCGTACATCATTTAACAATACTAAAAAA
GATGCAGCTCAACAGGAGGATGGCAAAAAAGCCCTTAATAACAAAGACTTCCGTCAAGCTATCCAATTTGGATTTGATCG
TGGTTCGTTCCAAGCTCAGACAGTCGGTGAAGATGCTAAAACAAAAGCCCTACGTAATATGCTAGTTCCACCAACATTTG
TGACTATTGGAAAAAATGACTTTGGTTCAGAAGTTGAAAAGGAAATTGCAAAACTTGGCGATGAATGGAAAAACATCAAC
TTAGCTGACGCTCAAGATGGTCTCTACAATCCAGAAAAGGCTAAAGTTGAGTTTGCTAAAGCCAAAGAAGCTCTGACAGC
TGAAGGAGTAACCTTCCCGGTTCAATTAGATTATCCTGTTGACCAAGCAAACGCAGCAACTGTTCAAGAGGCACAATCCT
TTAAACAATCTGTCGAAGCATCACTTGGTAAAGAAAACGTTGTTGTTAACGTTCTTGAAACAGAGACCTCTACTCATGAG
TCTCAAGGTTTCTACGCGAAAACACCAGAGCAGCAAGACTATGATATTATTGCATCGTGGTGGGGACCAGACTACCAAGA
TCCACGTACCTACCTTGATATTATGAGTCCAGTAGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAAGGATATTGTAGCAGCTGCAGGTCTCGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAT
GATGCTCGTTACACAGCTTACGCGAAAGCTCAAGCTTACTTGTTAGATGATGCTGTTGATATTCCTGTTGTATCTACAGG
TGGTTCACCACGTGTATCTAAAGTTGTACCGTTTAGTGGTGCCTTTGCATGGGCGGAGGCTAAAGGTTCGCTCTCATATA
AAGGAATGAAACTTCAAGACAAACCTGTTACGACAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAAGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.227

100

0.506
  amiA3 Streptococcus thermophilus LMG 18311

49.698

100

0.502
  amiA3 Streptococcus thermophilus LMD-9

49.094

100

0.495

Multiple sequence alignment