Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ELZ51_RS01860 Genome accession   NZ_LR134094
Coordinates   342013..342939 (+) Length   308 a.a.
NCBI ID   WP_126425843.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 337013..347939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS01850 (NCTC4669_00393) amiA 338475..340445 (+) 1971 WP_126425839.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ51_RS01855 (NCTC4669_00394) amiC 340511..342013 (+) 1503 WP_126425841.1 ABC transporter permease Regulator
  ELZ51_RS01860 (NCTC4669_00395) amiD 342013..342939 (+) 927 WP_126425843.1 oligopeptide ABC transporter permease OppC Regulator
  ELZ51_RS01865 (NCTC4669_00396) amiE 342948..344018 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  ELZ51_RS01870 (NCTC4669_00397) amiF 344011..344934 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34887.99 Da        Isoelectric Point: 9.5132

>NTDB_id=1118263 ELZ51_RS01860 WP_126425843.1 342013..342939(+) (amiD) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MKTIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1118263 ELZ51_RS01860 WP_126425843.1 342013..342939(+) (amiD) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGAAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTAACAATCT
TATTGATGAGTTTCATTTACCCAATGTTTGCGAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATACTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTCTGGTATGGAGC
GCGTAATTCTATCTTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATCATCATTGTT
TTGACCTATTCATTAGGGGCTGGTTTTTGGAATTTAATTTTAGCTTTCTGTATTACTGGATGGATCGGTGTAGCTTATTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAAAACCTCTTACCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTTTACGTGTCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACAACTCCAAGCTTAGGGCGTTTGATTGCTAATTACTC
AAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTCACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCTAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment