Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ELZ51_RS01855 Genome accession   NZ_LR134094
Coordinates   340511..342013 (+) Length   500 a.a.
NCBI ID   WP_126425841.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 335511..347013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS01840 - 335856..336713 (+) 858 Protein_316 DDE-type integrase/transposase/recombinase -
  ELZ51_RS01845 (NCTC4669_00392) pbp3 336907..338145 (-) 1239 WP_126425837.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ELZ51_RS01850 (NCTC4669_00393) amiA 338475..340445 (+) 1971 WP_126425839.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ51_RS01855 (NCTC4669_00394) amiC 340511..342013 (+) 1503 WP_126425841.1 ABC transporter permease Regulator
  ELZ51_RS01860 (NCTC4669_00395) amiD 342013..342939 (+) 927 WP_126425843.1 oligopeptide ABC transporter permease OppC Regulator
  ELZ51_RS01865 (NCTC4669_00396) amiE 342948..344018 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  ELZ51_RS01870 (NCTC4669_00397) amiF 344011..344934 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55940.34 Da        Isoelectric Point: 10.1806

>NTDB_id=1118262 ELZ51_RS01855 WP_126425841.1 340511..342013(+) (amiC) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDHAS
KVDSSVTTEATSANKVIYEKYIDTLGNGWQLKRFPVSKKFYATRQIPIYERVWNFFSNLVVIDHPWKIQDKDNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYVNGKFPFLHQNLVALNLGTSYPTYSNIPVLQVISQGQGRTALQDITFPTGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAIIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYKDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1118262 ELZ51_RS01855 WP_126425841.1 340511..342013(+) (amiC) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCATTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACCCTCGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACGCCAGATAAAAAGG
CTGCTTACGAAAGTTTAACCTTCCAACGTATGGGTTATATTAATTACTTTTCAAGTAAAGAGTTAAAAGATCATGCTTCT
AAAGTAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAATAAAGTTATTTATGAGAAATATATTGATACCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTCAGATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAACTTAGTTGTTATCGACCATCCTTGGAAGATTCAAGACAAGGATAACCCTAACCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCCCTTGTTGGGTCAGGAACACAACACAAATACCTTGTCTATGTCAATGG
TAAGTTCCCTTTCCTTCATCAAAACCTTGTCGCACTAAACTTAGGAACATCTTATCCAACTTATAGTAACATTCCTGTTC
TGCAGGTTATTTCCCAAGGTCAAGGACGAACAGCACTTCAAGATATCACTTTCCCAACAGGTGTGACTAAAAAATCATCG
GTAGATATTTATAGTCGTACTTATAAAAACCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAAGGTGATTC
TTATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTCAAAAATACTTACTTTGATCGCTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCTATTATCTATGTGGTCCGTTTCTTAGGAAGTATGGTTGGTTTGCC
AGATAGTTTCCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGTTACCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGGTCAAAAGGG
TTATCAGAATCTGAAATTTATAAAGACCACCTTTTCAAAAATGCTATGGTTCCTATTGTATCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCAACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCTATGATTGTTGGGCTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

60

100

0.6
  amiC Streptococcus thermophilus LMG 18311

60

100

0.6

Multiple sequence alignment