Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   EQB46_RS10095 Genome accession   NZ_LR129843
Coordinates   1834378..1835394 (-) Length   338 a.a.
NCBI ID   WP_074017570.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-2 isolate 180-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829378..1840394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB46_RS12025 - 1829455..1829586 (-) 132 WP_000768904.1 hypothetical protein -
  EQB46_RS10055 - 1829587..1830777 (-) 1191 WP_000167765.1 acetate kinase -
  EQB46_RS10060 comYH 1830828..1831781 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  EQB46_RS10065 - 1831842..1832436 (-) 595 Protein_1879 class I SAM-dependent methyltransferase -
  EQB46_RS10070 comGG/cglG 1832573..1832986 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQB46_RS10075 comGF/cglF 1832964..1833425 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQB46_RS10080 comGE/cglE 1833388..1833690 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQB46_RS10085 comGD/cglD 1833653..1834057 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQB46_RS10090 comGC/cglC 1834050..1834376 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  EQB46_RS10095 comGB/cglB 1834378..1835394 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQB46_RS10100 comGA/cglA/cilD 1835342..1836283 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  EQB46_RS10105 - 1836359..1836724 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQB46_RS10110 - 1836875..1837933 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  EQB46_RS10115 nagA 1838096..1839247 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38482.48 Da        Isoelectric Point: 9.6162

>NTDB_id=1116382 EQB46_RS10095 WP_074017570.1 1834378..1835394(-) (comGB/cglB) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSSLLDKQCVTQMRTGLSQGKSFSEMMESLGCSSTI
VTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATYPLILLGFLLLIMLGLRNYLLPQLDSSNIATRIIGNLPQIF
LGMVGLVSVLALLALTFYKRSSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEI
GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLVFIFVALIIV
LLYAAMLMPMYQNMEVNF

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1116382 EQB46_RS10095 WP_074017570.1 1834378..1835394(-) (comGB/cglB) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
ATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAAGCAAAAAAATATCATCACCCTATTTAA
CAATCTCTTTTCTAGCGGTTTTCATCTGGTGGAGACTATCTCCTTTTTAGATAGGAGTTCCTTGTTGGACAAGCAGTGTG
TGACCCAGATGCGTACAGGCTTGTCTCAGGGGAAATCATTCTCAGAAATGATGGAAAGTTTGGGATGTTCAAGTACCATT
GTCACTCAGTTATCTCTAGCTGAAGTTCATGGCAATCTTCACCTGAGTTTGGGAAAGATAGAAGAATATCTAGACAATCT
GGCCAAGGTCAAGAAAAAGTTAATTGAAGTAGCGACCTATCCTTTGATTTTGCTGGGTTTTCTTCTCTTAATTATGCTGG
GGCTACGGAATTACCTGCTCCCACAACTGGATAGTAGCAATATTGCCACCCGAATTATCGGTAATCTGCCACAAATTTTT
CTAGGCATGGTAGGGCTTGTTTCCGTGCTTGCCCTTTTAGCACTAACTTTTTATAAAAGAAGTTCTAAGATGAGTGTCTT
TTCTATCTTAGCACGCCTTCCCTTTATTGGAATCTTTGTGCAGACCTACTTGACAGCCTATTATGCACGTGAATGGGGGA
ATATGATTTCACAGGGAATGGAGCTGACGCAGATTTTTCAAATGATGCAGGAACAAGGTTCCCAGCTCTTTAAAGAAATC
GGTCAAGATCTGGCTCAAACCCTGAAAAATGGCCGTGAATTTTCTCAGACGATAGGAACCTATCCTTTCTTTAGGAAGGA
ATTGAGTCTCATCATAGAGTATGGGGAAGTTAAGTCCAAGCTGGGTAGTGAGTTGGAAATCTATGCTGAAAAAACTTGGG
AAGCCTTTTTTACCCGAGTCAACCGCACCATGAATTTGGTGCAGCCACTGGTTTTTATCTTTGTGGCACTGATTATCGTT
TTACTTTATGCGGCAATGCTCATGCCCATGTATCAAAATATGGAGGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus pneumoniae Rx1

98.521

100

0.985
  comGB/cglB Streptococcus pneumoniae D39

98.521

100

0.985
  comGB/cglB Streptococcus pneumoniae R6

98.521

100

0.985
  comGB/cglB Streptococcus pneumoniae TIGR4

98.521

100

0.985
  comGB/cglB Streptococcus mitis SK321

94.97

100

0.95
  comGB/cglB Streptococcus mitis NCTC 12261

94.083

100

0.941
  comYB Streptococcus gordonii str. Challis substr. CH1

70.536

99.408

0.701
  comYB Streptococcus mutans UA140

58.176

94.083

0.547
  comYB Streptococcus mutans UA159

58.176

94.083

0.547
  comGB Lactococcus lactis subsp. cremoris KW2

50.898

98.817

0.503

Multiple sequence alignment