Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   EQB46_RS10070 Genome accession   NZ_LR129843
Coordinates   1832573..1832986 (-) Length   137 a.a.
NCBI ID   WP_000265624.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-2 isolate 180-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1827573..1837986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB46_RS10045 - 1828268..1829092 (-) 825 WP_001809383.1 membrane protein insertase YidC -
  EQB46_RS10050 rnpA 1829067..1829438 (-) 372 WP_000739244.1 ribonuclease P protein component -
  EQB46_RS12025 - 1829455..1829586 (-) 132 WP_000768904.1 hypothetical protein -
  EQB46_RS10055 - 1829587..1830777 (-) 1191 WP_000167765.1 acetate kinase -
  EQB46_RS10060 comYH 1830828..1831781 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  EQB46_RS10065 - 1831842..1832436 (-) 595 Protein_1879 class I SAM-dependent methyltransferase -
  EQB46_RS10070 comGG/cglG 1832573..1832986 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQB46_RS10075 comGF/cglF 1832964..1833425 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQB46_RS10080 comGE/cglE 1833388..1833690 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQB46_RS10085 comGD/cglD 1833653..1834057 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQB46_RS10090 comGC/cglC 1834050..1834376 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  EQB46_RS10095 comGB/cglB 1834378..1835394 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQB46_RS10100 comGA/cglA/cilD 1835342..1836283 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  EQB46_RS10105 - 1836359..1836724 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQB46_RS10110 - 1836875..1837933 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15955.42 Da        Isoelectric Point: 10.2472

>NTDB_id=1116377 EQB46_RS10070 WP_000265624.1 1832573..1832986(-) (comGG/cglG) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1116377 EQB46_RS10070 WP_000265624.1 1832573..1832986(-) (comGG/cglG) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae D39

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae R6

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae TIGR4

99.27

100

0.993

  comGG/cglG Streptococcus mitis SK321

87.591

100

0.876

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment