Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   EQB42_RS10105 Genome accession   NZ_LR129841
Coordinates   1899741..1900145 (-) Length   134 a.a.
NCBI ID   WP_000588002.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 947 isolate 947     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894741..1905145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB42_RS10070 rnpA 1895163..1895534 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQB42_RS10075 - 1895682..1896872 (-) 1191 WP_000167755.1 acetate kinase -
  EQB42_RS10080 comYH 1896923..1897876 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  EQB42_RS10085 - 1897937..1898524 (-) 588 Protein_1872 class I SAM-dependent methyltransferase -
  EQB42_RS10090 comGG/cglG 1898661..1899074 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQB42_RS10095 comGF/cglF 1899052..1899513 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQB42_RS10100 comGE/cglE 1899476..1899778 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQB42_RS10105 comGD/cglD 1899741..1900145 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQB42_RS10110 comGC/cglC 1900138..1900464 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  EQB42_RS10115 comGB/cglB 1900466..1901482 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQB42_RS10120 comGA/cglA/cilD 1901430..1902371 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  EQB42_RS10125 - 1902447..1902812 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQB42_RS10130 - 1902963..1904021 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14667.82 Da        Isoelectric Point: 10.2164

>NTDB_id=1116304 EQB42_RS10105 WP_000588002.1 1899741..1900145(-) (comGD/cglD) [Streptococcus pneumoniae strain 947 isolate 947]
MIKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTNLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1116304 EQB42_RS10105 WP_000588002.1 1899741..1900145(-) (comGD/cglD) [Streptococcus pneumoniae strain 947 isolate 947]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGCTTTGAGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAATCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

96.269

100

0.963
  comGD/cglD Streptococcus pneumoniae Rx1

95.522

100

0.955
  comGD/cglD Streptococcus pneumoniae D39

95.522

100

0.955
  comGD/cglD Streptococcus pneumoniae R6

95.522

100

0.955
  comGD/cglD Streptococcus mitis NCTC 12261

95.489

99.254

0.948
  comGD/cglD Streptococcus mitis SK321

94.776

100

0.948
  comYD Streptococcus gordonii str. Challis substr. CH1

57.48

94.776

0.545
  comYD Streptococcus mutans UA140

49.219

95.522

0.47
  comYD Streptococcus mutans UA159

49.219

95.522

0.47

Multiple sequence alignment