Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   EQB42_RS10095 Genome accession   NZ_LR129841
Coordinates   1899052..1899513 (-) Length   153 a.a.
NCBI ID   WP_000250529.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 947 isolate 947     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894052..1904513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB42_RS10065 - 1894364..1895188 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQB42_RS10070 rnpA 1895163..1895534 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQB42_RS10075 - 1895682..1896872 (-) 1191 WP_000167755.1 acetate kinase -
  EQB42_RS10080 comYH 1896923..1897876 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  EQB42_RS10085 - 1897937..1898524 (-) 588 Protein_1872 class I SAM-dependent methyltransferase -
  EQB42_RS10090 comGG/cglG 1898661..1899074 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQB42_RS10095 comGF/cglF 1899052..1899513 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQB42_RS10100 comGE/cglE 1899476..1899778 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQB42_RS10105 comGD/cglD 1899741..1900145 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQB42_RS10110 comGC/cglC 1900138..1900464 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  EQB42_RS10115 comGB/cglB 1900466..1901482 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQB42_RS10120 comGA/cglA/cilD 1901430..1902371 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  EQB42_RS10125 - 1902447..1902812 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQB42_RS10130 - 1902963..1904021 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17851.34 Da        Isoelectric Point: 6.4832

>NTDB_id=1116302 EQB42_RS10095 WP_000250529.1 1899052..1899513(-) (comGF/cglF) [Streptococcus pneumoniae strain 947 isolate 947]
MVQNSCWQSKSHKVKAFTLLESLLALIVISGGLLLFQAMSQLLISEVRYQQQSEQKEWLLFVDQLEAELDRSQFEKVESN
RLYMKQDGKDIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEDNQLVHFRFQFQKGLEREFIYRVEKEES

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1116302 EQB42_RS10095 WP_000250529.1 1899052..1899513(-) (comGF/cglF) [Streptococcus pneumoniae strain 947 isolate 947]
ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTAGAATCCCTGCTTGCCCTCAT
TGTCATCAGTGGGGGATTACTCCTTTTTCAAGCTATGAGTCAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCG
AGCAAAAGGAGTGGCTCTTGTTTGTGGACCAACTTGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAAGCAAT
CGCCTATACATGAAGCAAGATGGCAAGGACATCGCCATCGGTAAGTCAAAGTCAGACGATTTTCGTAAAACCGATGCTAG
TGGACGGGGGTATCAGCCTATGGTTTATGGCCTCAAATCAGCTCAGATTACAGAGGACAATCAACTGGTTCATTTTCGTT
TCCAGTTTCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGAAGAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(45-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae Rx1

94.118

100

0.941
  comGF/cglF Streptococcus pneumoniae D39

94.118

100

0.941
  comGF/cglF Streptococcus pneumoniae R6

94.118

100

0.941
  comGF/cglF Streptococcus pneumoniae TIGR4

94.118

100

0.941
  comGF/cglF Streptococcus mitis SK321

92.81

100

0.928
  comGF/cglF Streptococcus mitis NCTC 12261

91.503

100

0.915

Multiple sequence alignment