Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQB42_RS10080 Genome accession   NZ_LR129841
Coordinates   1896923..1897876 (-) Length   317 a.a.
NCBI ID   WP_000345084.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 947 isolate 947     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1891923..1902876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB42_RS10055 - 1892685..1893308 (-) 624 WP_000932661.1 hypothetical protein -
  EQB42_RS10060 jag 1893359..1894345 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  EQB42_RS10065 - 1894364..1895188 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQB42_RS10070 rnpA 1895163..1895534 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQB42_RS10075 - 1895682..1896872 (-) 1191 WP_000167755.1 acetate kinase -
  EQB42_RS10080 comYH 1896923..1897876 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  EQB42_RS10085 - 1897937..1898524 (-) 588 Protein_1872 class I SAM-dependent methyltransferase -
  EQB42_RS10090 comGG/cglG 1898661..1899074 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQB42_RS10095 comGF/cglF 1899052..1899513 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQB42_RS10100 comGE/cglE 1899476..1899778 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQB42_RS10105 comGD/cglD 1899741..1900145 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQB42_RS10110 comGC/cglC 1900138..1900464 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  EQB42_RS10115 comGB/cglB 1900466..1901482 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQB42_RS10120 comGA/cglA/cilD 1901430..1902371 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  EQB42_RS10125 - 1902447..1902812 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2270

>NTDB_id=1116300 EQB42_RS10080 WP_000345084.1 1896923..1897876(-) (comYH) [Streptococcus pneumoniae strain 947 isolate 947]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTGPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1116300 EQB42_RS10080 WP_000345084.1 1896923..1897876(-) (comYH) [Streptococcus pneumoniae strain 947 isolate 947]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCTCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCGGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment