Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LFA_RS04480 Genome accession   NZ_LN614827
Coordinates   1111873..1113969 (+) Length   698 a.a.
NCBI ID   WP_045095107.1    Uniprot ID   A0A098G1U3
Organism   Legionella fallonii LLAP-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106873..1118969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS04455 (LFA_1003) - 1107786..1108628 (-) 843 WP_045095102.1 MC/SLC25 family protein -
  LFA_RS04460 (LFA_1004) pilM 1109117..1110181 (+) 1065 WP_045095103.1 type IV pilus assembly protein PilM Machinery gene
  LFA_RS04465 (LFA_1005) pilN 1110186..1110734 (+) 549 WP_045095104.1 PilN domain-containing protein Machinery gene
  LFA_RS04470 (LFA_1006) pilO 1110749..1111348 (+) 600 WP_045095105.1 type 4a pilus biogenesis protein PilO Machinery gene
  LFA_RS04475 (LFA_1007) pilP 1111345..1111863 (+) 519 WP_045095106.1 pilus assembly protein PilP Machinery gene
  LFA_RS04480 (LFA_1008) pilQ 1111873..1113969 (+) 2097 WP_045095107.1 type IV pilus secretin PilQ Machinery gene
  LFA_RS04485 (LFA_1009) aroK 1114238..1114765 (+) 528 WP_045095108.1 shikimate kinase AroK -
  LFA_RS04490 (LFA_1010) aroB 1114752..1115855 (+) 1104 WP_045095109.1 3-dehydroquinate synthase -
  LFA_RS04495 (LFA_1011) - 1115858..1117321 (+) 1464 WP_045095110.1 SPOR domain-containing protein -
  LFA_RS04500 (LFA_1012) - 1117395..1117829 (+) 435 WP_045095111.1 universal stress protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77374.83 Da        Isoelectric Point: 9.8145

>NTDB_id=1113609 LFA_RS04480 WP_045095107.1 1111873..1113969(+) (pilQ) [Legionella fallonii LLAP-10]
MRRLIAILIIMSASLGVAFSKDNSLRSVKIIPLPEEKVRIDFEFSKVLKQLPASFITQQPPRLILDFINADIQLPLNEKT
KEVKLGSLNTYNIVAVGDRIRVMLDLQRTVSYSGSVAGTIYSLILNGKSNELFAPTKKVFITNQVVNAKHEINHIDFRGI
EKQGGRVLIDVSDTSIPIDVTQSGKEVIVNFLNTKIPPRLMKRFDVADFHSPVQVVTFQQEGKNVRMTVVNKGVYGHFVY
QVNKQFMVDIFPLTAEEIQQEKMKKQVFTGKRISLNFQNISIRAVLQLLADFTGINIVVSDKIKGDITLRLNDIPWDQAL
DIILTTQGLDKRKTGNVMLVDTKANLDKMEESKLKSQQIIARLEPIRSDLIQINYAKAADLAILIKDKQNSLLSERGKIS
VDVRTNTVWIQDTATKIEEVRELVKQLDVPVKQVLIEARIVEVSKDFSQDIGIRWGISKPSALSGTLAGANQMQQGVTPA
NVTPFTDRLNLDLVAAPANLVTPATVGLALAKINDNILLDLELSALESEGRAELISSPRLITINQQSAVIESGQEIPYQE
ATSSGATAVAFKKAVLSLKVTPQITPDSKILMDLQINQDTASPQTFNGVPAILTKEIQTNVLVNNGQTIVLGGIYTQDKT
KSINRIPFFGQLPVVGVLFRNTQIGLKNDELLIFITPKIITNSLSITTIEGREKEVYK

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=1113609 LFA_RS04480 WP_045095107.1 1111873..1113969(+) (pilQ) [Legionella fallonii LLAP-10]
TTGAGACGGTTAATTGCTATTTTGATTATAATGAGTGCTAGTTTAGGTGTGGCATTTTCTAAAGATAATTCACTTAGGTC
AGTAAAAATTATTCCTTTGCCAGAAGAGAAAGTACGTATTGATTTTGAGTTTTCTAAGGTTTTAAAGCAATTGCCAGCAA
GCTTTATTACGCAACAGCCGCCTCGGTTAATATTAGATTTTATCAATGCAGATATTCAATTACCTCTAAATGAGAAAACG
AAAGAAGTCAAACTAGGTTCTTTAAATACTTATAATATAGTGGCTGTGGGGGACAGGATTCGAGTGATGCTAGACTTGCA
ACGTACAGTTTCATACTCTGGAAGTGTGGCAGGGACTATTTACAGTCTCATTTTAAATGGTAAAAGTAATGAGCTATTTG
CACCTACCAAAAAGGTTTTTATAACAAATCAGGTCGTTAATGCTAAACATGAGATCAATCATATAGATTTTCGTGGGATA
GAAAAGCAAGGGGGACGAGTTCTCATTGATGTATCAGACACTAGTATTCCTATCGATGTAACTCAATCGGGCAAAGAGGT
GATCGTTAATTTTTTAAATACCAAAATTCCTCCTAGGTTGATGAAGCGTTTTGATGTCGCTGATTTCCATAGCCCTGTAC
AAGTTGTTACTTTTCAGCAAGAGGGGAAAAATGTACGTATGACTGTGGTCAATAAAGGAGTTTATGGTCATTTTGTTTAT
CAAGTGAATAAACAATTTATGGTTGATATTTTTCCTTTGACAGCAGAAGAAATTCAACAAGAAAAAATGAAAAAACAGGT
GTTTACAGGTAAGCGAATTTCATTGAATTTCCAAAATATTAGTATTCGTGCTGTATTGCAATTACTGGCTGATTTTACTG
GGATTAATATAGTCGTTAGCGATAAAATTAAAGGAGACATTACTTTAAGATTAAATGATATTCCATGGGATCAGGCTTTA
GATATTATCTTGACAACACAAGGTTTGGATAAGCGTAAAACTGGCAACGTGATGTTGGTTGATACCAAAGCGAACCTTGA
TAAAATGGAGGAGTCTAAATTAAAAAGTCAGCAGATTATTGCAAGATTAGAGCCTATTCGTTCTGATCTGATACAAATTA
ATTATGCTAAGGCAGCGGATTTGGCTATTTTAATCAAAGACAAGCAGAACTCACTTTTATCTGAACGAGGTAAAATCAGT
GTCGACGTTAGAACGAATACTGTTTGGATTCAAGATACTGCAACAAAAATAGAAGAAGTAAGGGAGTTAGTAAAACAATT
AGATGTTCCAGTAAAACAAGTACTCATTGAGGCTCGTATAGTAGAAGTATCTAAAGATTTTAGTCAGGATATAGGAATAC
GATGGGGTATTTCCAAACCATCCGCTTTGAGTGGAACCTTAGCTGGAGCTAACCAGATGCAGCAAGGAGTTACGCCAGCT
AACGTAACTCCATTTACTGATAGGTTAAACTTGGATCTGGTAGCGGCTCCAGCAAATTTGGTTACCCCTGCTACTGTTGG
TCTAGCCTTAGCTAAAATAAATGATAATATATTACTTGATTTGGAACTTTCCGCCTTAGAAAGTGAAGGACGCGCTGAAT
TAATCTCTAGTCCGCGACTTATTACGATTAACCAGCAATCTGCTGTAATTGAATCAGGGCAGGAAATTCCGTATCAAGAA
GCGACATCTAGCGGGGCAACTGCAGTAGCATTTAAAAAGGCCGTACTTAGTTTAAAAGTAACGCCGCAAATTACACCCGA
TAGTAAAATATTAATGGATTTGCAGATTAATCAGGATACAGCGTCTCCCCAGACTTTTAATGGGGTTCCTGCTATTTTGA
CTAAGGAAATTCAAACAAATGTTTTAGTGAATAATGGTCAGACTATAGTGCTTGGAGGGATCTATACTCAAGATAAGACC
AAATCAATTAATAGAATACCTTTCTTTGGGCAACTGCCTGTAGTAGGTGTTTTATTTAGAAATACGCAAATTGGATTAAA
AAATGATGAGCTGTTGATTTTTATTACGCCAAAGATTATAACCAATTCTTTATCAATCACGACTATTGAAGGAAGAGAGA
AGGAGGTATACAAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(370-433)

AMIN domain (AMIN)

(38-113)

Bacterial type II and III secretion system protein (Secretin)

(525-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098G1U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

81.662

100

0.817
  pilQ Legionella pneumophila strain ERS1305867

81.765

97.421

0.797
  pilQ Pseudomonas aeruginosa PAK

37.135

100

0.383
  pilQ Acinetobacter baumannii strain A118

35.27

100

0.374
  comQ Acinetobacter baylyi ADP1

36.313

100

0.372
  pilQ Acinetobacter baumannii D1279779

35.135

100

0.372

Multiple sequence alignment