Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LFA_RS04460 Genome accession   NZ_LN614827
Coordinates   1109117..1110181 (+) Length   354 a.a.
NCBI ID   WP_045095103.1    Uniprot ID   A0A098G1T4
Organism   Legionella fallonii LLAP-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1104117..1115181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS04450 (LFA_1002) - 1106309..1107379 (-) 1071 WP_052673854.1 hypothetical protein -
  LFA_RS04455 (LFA_1003) - 1107786..1108628 (-) 843 WP_045095102.1 MC/SLC25 family protein -
  LFA_RS04460 (LFA_1004) pilM 1109117..1110181 (+) 1065 WP_045095103.1 type IV pilus assembly protein PilM Machinery gene
  LFA_RS04465 (LFA_1005) pilN 1110186..1110734 (+) 549 WP_045095104.1 PilN domain-containing protein Machinery gene
  LFA_RS04470 (LFA_1006) pilO 1110749..1111348 (+) 600 WP_045095105.1 type 4a pilus biogenesis protein PilO Machinery gene
  LFA_RS04475 (LFA_1007) pilP 1111345..1111863 (+) 519 WP_045095106.1 pilus assembly protein PilP Machinery gene
  LFA_RS04480 (LFA_1008) pilQ 1111873..1113969 (+) 2097 WP_045095107.1 type IV pilus secretin PilQ Machinery gene
  LFA_RS04485 (LFA_1009) aroK 1114238..1114765 (+) 528 WP_045095108.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38805.93 Da        Isoelectric Point: 4.8435

>NTDB_id=1113605 LFA_RS04460 WP_045095103.1 1109117..1110181(+) (pilM) [Legionella fallonii LLAP-10]
MLKLFRPQHHSVLGIDISSSAVKILEISGSGEALCVDGYGRENLPPFALDGNLIKDTEAVANCIKKVLLKSRLTSKNAAL
AVPDSVVINKVVQINDGLNDQEMEELVIIEADKYIPYPIDEINLDFEILGHSAKNSAMLDVLIVASRAENVHRRAEVAAL
AGLTATIIDVESYAVERAALQLAKDLPASGQDKIVAIVDIGMRFCHLFVLDGMKLIFSREEKFGGMQLIEAIAEHYKMTP
EQAMEAKEQGTLPNDYDSEVLTPYKEMLLLQIKRTLQFFYSTSQHGFVDHILLAGGGARQYGLDTLIQEQLGVMTTVANP
LARMSMNKTINLEAIKNDAPALMVACGLALRNIE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1113605 LFA_RS04460 WP_045095103.1 1109117..1110181(+) (pilM) [Legionella fallonii LLAP-10]
GTGCTCAAACTCTTTAGACCCCAACATCATTCAGTTTTGGGAATAGACATCAGTTCATCCGCGGTGAAAATCTTAGAAAT
TTCTGGTTCTGGAGAAGCGCTATGCGTCGATGGTTACGGGCGTGAAAACTTGCCCCCTTTTGCTCTCGACGGCAATTTGA
TTAAAGATACTGAAGCCGTTGCCAATTGTATCAAGAAAGTACTCTTAAAATCACGATTAACTTCTAAGAATGCGGCATTA
GCAGTTCCTGATTCTGTGGTCATTAATAAAGTAGTGCAGATTAATGATGGTCTCAATGATCAAGAAATGGAAGAACTTGT
TATTATTGAAGCAGATAAATATATTCCCTATCCTATAGATGAAATTAACCTTGATTTTGAGATTCTGGGGCATTCTGCTA
AAAACTCAGCCATGTTAGATGTGTTAATAGTCGCGTCAAGAGCAGAAAATGTTCATCGTAGGGCTGAGGTTGCTGCTCTT
GCTGGTTTGACTGCTACCATTATTGACGTAGAGTCTTATGCGGTAGAACGAGCCGCTCTGCAGCTAGCAAAGGACTTACC
AGCAAGCGGACAGGATAAAATAGTCGCTATTGTCGATATTGGAATGCGGTTTTGTCATTTGTTTGTTCTTGATGGCATGA
AGTTAATCTTTTCTAGAGAGGAAAAGTTTGGCGGTATGCAGCTGATCGAGGCCATTGCCGAACACTATAAAATGACTCCA
GAACAAGCAATGGAGGCAAAAGAACAAGGAACGCTACCTAATGATTATGATTCCGAAGTACTAACACCGTATAAAGAAAT
GCTCTTGTTACAGATTAAGCGCACTTTGCAATTTTTCTATTCAACAAGTCAACATGGTTTTGTTGATCACATTTTATTGG
CAGGAGGTGGGGCAAGACAGTATGGGTTAGATACTTTAATTCAAGAGCAATTAGGAGTTATGACTACTGTTGCCAACCCT
TTGGCTCGCATGTCTATGAACAAAACGATTAATCTTGAGGCTATAAAGAATGATGCTCCTGCATTGATGGTGGCTTGTGG
ATTAGCTCTAAGAAATATAGAGTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098G1T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

74.011

100

0.74
  comM Acinetobacter baylyi ADP1

42.09

100

0.421
  comM Acinetobacter nosocomialis M2

42.09

100

0.421
  pilM Acinetobacter baumannii D1279779

41.525

100

0.415

Multiple sequence alignment