Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | KHN94_RS04505 | Genome accession | NZ_HG992758 |
| Coordinates | 978559..978843 (+) | Length | 94 a.a. |
| NCBI ID | WP_182030492.1 | Uniprot ID | - |
| Organism | Vibrio sp. B1FLJ16 isolate B1REV17 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 973559..983843
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHN94_RS04495 (ACOMICROBIO_LOCUS663) | - | 976078..976350 (+) | 273 | WP_182011095.1 | HU family DNA-binding protein | - |
| KHN94_RS04500 (ACOMICROBIO_LOCUS664) | ppiD | 976553..978412 (+) | 1860 | WP_182030397.1 | peptidylprolyl isomerase | - |
| KHN94_RS04505 (ACOMICROBIO_LOCUS665) | comEA | 978559..978843 (+) | 285 | WP_182030492.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| KHN94_RS04510 (ACOMICROBIO_EPCKBFOG_00922) | rrtA | 978938..979489 (-) | 552 | WP_182030399.1 | rhombosortase | - |
| KHN94_RS04515 (ACOMICROBIO_EPCKBFOG_00923) | - | 979493..980113 (+) | 621 | WP_182030401.1 | DTW domain-containing protein | - |
| KHN94_RS04520 (ACOMICROBIO_LOCUS666) | - | 980131..981465 (-) | 1335 | WP_182011099.1 | anti-phage deoxyguanosine triphosphatase | - |
| KHN94_RS04525 (ACOMICROBIO_EPCKBFOG_00925) | yfbR | 981466..982050 (-) | 585 | WP_182011100.1 | 5'-deoxynucleotidase | - |
| KHN94_RS04530 (ACOMICROBIO_LOCUS667) | - | 982128..983342 (-) | 1215 | WP_182011101.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10203.83 Da Isoelectric Point: 5.8183
>NTDB_id=1112516 KHN94_RS04505 WP_182030492.1 978559..978843(+) (comEA) [Vibrio sp. B1FLJ16 isolate B1REV17]
MKWVLTLCLCMFAPFGLAADSDTDKYEGIEITVNVNTASAKEIATMLKGIGAKKAQDIVDYRTEHGPFKTVNELSNIKGI
GAATLEKNEGRILL
MKWVLTLCLCMFAPFGLAADSDTDKYEGIEITVNVNTASAKEIATMLKGIGAKKAQDIVDYRTEHGPFKTVNELSNIKGI
GAATLEKNEGRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=1112516 KHN94_RS04505 WP_182030492.1 978559..978843(+) (comEA) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGAAGTGGGTTTTGACTTTGTGTTTATGTATGTTTGCACCGTTTGGCTTGGCGGCAGACTCGGACACAGACAAATATGA
AGGCATTGAAATTACAGTTAATGTGAATACTGCATCTGCAAAAGAAATCGCGACAATGCTTAAAGGTATTGGTGCAAAGA
AAGCACAGGATATAGTGGACTACCGTACCGAGCACGGTCCGTTTAAAACCGTAAATGAGCTTTCCAATATTAAAGGAATT
GGTGCGGCTACTCTGGAGAAAAATGAAGGGCGTATTCTCCTCTAG
ATGAAGTGGGTTTTGACTTTGTGTTTATGTATGTTTGCACCGTTTGGCTTGGCGGCAGACTCGGACACAGACAAATATGA
AGGCATTGAAATTACAGTTAATGTGAATACTGCATCTGCAAAAGAAATCGCGACAATGCTTAAAGGTATTGGTGCAAAGA
AAGCACAGGATATAGTGGACTACCGTACCGAGCACGGTCCGTTTAAAACCGTAAATGAGCTTTCCAATATTAAAGGAATT
GGTGCGGCTACTCTGGAGAAAAATGAAGGGCGTATTCTCCTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
77.66 |
100 |
0.777 |
| comEA | Vibrio campbellii strain DS40M4 |
67.368 |
100 |
0.681 |
| comEA | Vibrio cholerae C6706 |
54.348 |
97.872 |
0.532 |
| comEA | Vibrio cholerae strain A1552 |
54.348 |
97.872 |
0.532 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
54.839 |
65.957 |
0.362 |
| comEA | Legionella pneumophila str. Paris |
34.694 |
100 |
0.362 |
| comEA | Legionella pneumophila strain ERS1305867 |
34.694 |
100 |
0.362 |