Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KJB05_RS13205 Genome accession   NZ_HG992742
Coordinates   2922541..2922840 (-) Length   99 a.a.
NCBI ID   WP_020196004.1    Uniprot ID   A0A0C1VUB7
Organism   Vibrio sp. B1ASS3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2917541..2927840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS13175 (ACOMICROBIO_LOCUS1747) - 2917792..2918040 (-) 249 WP_208446091.1 hypothetical protein -
  KJB05_RS13180 (ACOMICROBIO_LOCUS1748) - 2918085..2919164 (-) 1080 WP_208446092.1 ATP-binding protein -
  KJB05_RS13185 (ACOMICROBIO_NCLOACGD_02660) yfbR 2919307..2919900 (-) 594 WP_191686041.1 5'-deoxynucleotidase -
  KJB05_RS13190 (ACOMICROBIO_LOCUS1749) - 2920221..2921225 (+) 1005 Protein_2501 anti-phage deoxyguanosine triphosphatase -
  KJB05_RS13195 (ACOMICROBIO_NCLOACGD_02662) - 2921246..2921863 (-) 618 WP_208446093.1 DTW domain-containing protein -
  KJB05_RS13200 (ACOMICROBIO_NCLOACGD_02663) rrtA 2921867..2922418 (+) 552 WP_208446094.1 rhombosortase -
  KJB05_RS13205 (ACOMICROBIO_LOCUS1750) comEA 2922541..2922840 (-) 300 WP_020196004.1 helix-hairpin-helix domain-containing protein Machinery gene
  KJB05_RS13210 (ACOMICROBIO_LOCUS1751) ppiD 2922987..2924846 (-) 1860 WP_208446095.1 peptidylprolyl isomerase -
  KJB05_RS13215 (ACOMICROBIO_LOCUS1752) - 2925061..2925333 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10819.59 Da        Isoelectric Point: 7.9988

>NTDB_id=1112401 KJB05_RS13205 WP_020196004.1 2922541..2922840(-) (comEA) [Vibrio sp. B1ASS3]
MKWMLTLCLLLLAPMSWAEEGKSVTTKAAKYEGIEITVNVNTASAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTAADLS
KVKGIGEATVKKNQDRILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1112401 KJB05_RS13205 WP_020196004.1 2922541..2922840(-) (comEA) [Vibrio sp. B1ASS3]
ATGAAATGGATGTTAACACTGTGCTTGCTGCTATTGGCGCCAATGAGTTGGGCGGAAGAAGGCAAGTCGGTAACGACAAA
AGCGGCCAAGTATGAAGGCATTGAAATCACCGTTAATGTGAATACGGCTTCCGCGGAAGAAATTGCGACACTACTGAATG
GTATTGGGACGAAAAAAGCGCAAGACATTGTTGAGTACCGAAATGAACATGGCCCATTTAAAACCGCAGCGGACTTAAGC
AAAGTGAAAGGCATTGGTGAAGCGACGGTGAAAAAGAACCAAGATCGTATCTTACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1VUB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

83.838

100

0.838
  comEA Vibrio parahaemolyticus RIMD 2210633

74.747

100

0.747
  comEA Vibrio cholerae C6706

59

100

0.596
  comEA Vibrio cholerae strain A1552

59

100

0.596
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.495
  comEA/comE1 Glaesserella parasuis strain SC1401

39.252

100

0.424
  comEA Acinetobacter baumannii strain A118

30.894

100

0.384

Multiple sequence alignment