Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SPYH293_RS01445 Genome accession   NZ_HG316453
Coordinates   274425..274976 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain H293     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 269425..279976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYH293_RS01445 (SPYH293_00300) comX/sigX/comX2/sigX2 274425..274976 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  SPYH293_RS01450 (SPYH293_00301) - 275535..276062 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  SPYH293_RS01455 (SPYH293_00302) yqeH 276062..277180 (+) 1119 WP_031488554.1 ribosome biogenesis GTPase YqeH -
  SPYH293_RS01460 (SPYH293_00303) yhbY 277205..277513 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  SPYH293_RS01465 (SPYH293_00304) - 277582..278214 (+) 633 WP_031488555.1 nicotinate-nucleotide adenylyltransferase -
  SPYH293_RS01470 (SPYH293_00305) yqeK 278211..278804 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SPYH293_RS01475 (SPYH293_00306) rsfS 278828..279181 (+) 354 WP_032460821.1 ribosome silencing factor -
  SPYH293_RS01480 (SPYH293_00307) - 279229..279972 (+) 744 WP_014407307.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1111857 SPYH293_RS01445 WP_010921894.1 274425..274976(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain H293]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1111857 SPYH293_RS01445 WP_010921894.1 274425..274976(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain H293]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.