Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   HMPREF9425_RS00075 Genome accession   NZ_GL831112
Coordinates   16807..18042 (-) Length   411 a.a.
NCBI ID   WP_003095726.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 11807..23042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS00055 (HMPREF9425_0012) - 12835..13026 (-) 192 WP_002886272.1 DUF951 domain-containing protein -
  HMPREF9425_RS00060 (HMPREF9425_0013) dnaN 13078..14214 (-) 1137 WP_003095723.1 DNA polymerase III subunit beta -
  HMPREF9425_RS00065 (HMPREF9425_0014) dnaA 14369..15733 (-) 1365 WP_003095243.1 chromosomal replication initiator protein DnaA -
  HMPREF9425_RS00070 (HMPREF9425_0015) spo0J 15974..16741 (-) 768 WP_003095245.1 ParB/RepB/Spo0J family partition protein Regulator
  HMPREF9425_RS00075 (HMPREF9425_0016) htrA 16807..18042 (-) 1236 WP_003095726.1 S1C family serine protease Regulator
  HMPREF9425_RS00080 (HMPREF9425_0017) rlmH 18236..18715 (+) 480 WP_037621613.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  HMPREF9425_RS00085 - 18731..19413 (+) 683 Protein_17 YoaK family protein -
  HMPREF9425_RS00105 (HMPREF9425_0020) - 19958..22552 (-) 2595 WP_003095733.1 YfhO family protein -

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42976.17 Da        Isoelectric Point: 4.7232

>NTDB_id=1111717 HMPREF9425_RS00075 WP_003095726.1 16807..18042(-) (htrA) [Streptococcus vestibularis ATCC 49124]
MKKFNWKKIVTPIAMLVIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTAKTVYSNTTDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYGRIFGGDDNSDSSQDKSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKIKTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTVTMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISMADLNSLS
SSTTSKLDLPDKVKSGVVVGSVQKGMPADGKLQENDVITEIDGKEISSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTEDL
KLTKSTEDLSD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1111717 HMPREF9425_RS00075 WP_003095726.1 16807..18042(-) (htrA) [Streptococcus vestibularis ATCC 49124]
GTGAAAAAATTTAACTGGAAAAAAATAGTAACGCCAATTGCAATGCTAGTTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCTGGGGTATCTTTTACCAATACAACAGATACAGGAGTCAAAACGGCTAAGACCGTCTACA
GCAATACAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCTGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTAAATGACCTCTATGGCCGTATCTTTGGTGGAGATGATAATTCTGACTCTAGCCAAGACAAATCAAA
AGATTCTGATGGGTTGCAAGTCGCTGGTGAAGGTTCTGGGGTCATCTATAAAAAAGATGGTAAAGAGGCTTATATCGTAA
CCAACAACCACGTTGTCGATGGCGCTAAAAAACTCGAAATCATGCTTTCAGATGGATCAAAAATTACTGGTGAACTCGTT
GGTAAAGATACTTACTCTGACCTAGCAGTTGTCAAAGTTTCTTCAGATAAAATTAAAACCGTAGCGGAATTTGCAGACTC
AAACTCTCTAACAGTAGGTGAGAAGGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAGG
GAATCGTTTCTAGCCTTAGCCGTACTGTAACTATGCAAAACGACAATGGTGAAACTGTTTCAACAAATGCTATCCAAACA
GATGCTGCCATTAACCCTGGTAACTCAGGTGGTGCCTTAGTCAATATCGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCAGCAGTCGCTGGTAGCGCCGTTGAAGGTATGGGATTTGCCATTCCATCAAACGATGTTGTCGAAA
TCATCAATCAATTGGAAAAAGACGGTAAAGTTACACGACCAGCCCTAGGAATCTCAATGGCCGATCTTAATAGCCTTTCT
AGCAGTACAACTTCTAAATTAGATTTACCAGATAAGGTGAAATCTGGAGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAAAATGATGTTATCACTGAGATTGATGGTAAGGAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGAAGATCTT
AAATTAACAAAATCTACAGAAGACTTATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

62.129

98.297

0.611

  htrA Streptococcus gordonii str. Challis substr. CH1

57.767

100

0.579

  htrA Streptococcus mitis NCTC 12261

54.768

99.513

0.545

  htrA Streptococcus pneumoniae TIGR4

54.523

99.513

0.543

  htrA Streptococcus pneumoniae D39

54.523

99.513

0.543

  htrA Streptococcus pneumoniae Rx1

54.523

99.513

0.543

  htrA Streptococcus pneumoniae R6

54.523

99.513

0.543


Multiple sequence alignment