Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ACOI0R_RS07620 Genome accession   NZ_CP184802
Coordinates   448855..449961 (+) Length   368 a.a.
NCBI ID   WP_005297691.1    Uniprot ID   A0A2T3I981
Organism   Photobacterium damselae subsp. piscicida strain DQ-SS1     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443855..454961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI0R_RS07590 - 444691..445284 (-) 594 WP_044174415.1 XTP/dITP diphosphatase -
  ACOI0R_RS07595 yggU 445386..445685 (-) 300 WP_036763214.1 DUF167 family protein YggU -
  ACOI0R_RS07600 - 445682..446239 (-) 558 WP_005297682.1 YggT family protein -
  ACOI0R_RS07605 proC 446251..447069 (-) 819 WP_005297684.1 pyrroline-5-carboxylate reductase -
  ACOI0R_RS07610 - 447085..447786 (-) 702 WP_005297686.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACOI0R_RS07615 pilT 447809..448843 (+) 1035 WP_115425628.1 type IV pilus twitching motility protein PilT Machinery gene
  ACOI0R_RS07620 pilU 448855..449961 (+) 1107 WP_005297691.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACOI0R_RS07625 ruvX 450289..450714 (-) 426 WP_005297693.1 Holliday junction resolvase RuvX -
  ACOI0R_RS07630 - 450711..451274 (-) 564 WP_044174430.1 YqgE/AlgH family protein -
  ACOI0R_RS07635 gshB 451428..452375 (-) 948 WP_005297697.1 glutathione synthase -
  ACOI0R_RS07640 rsmE 452396..453127 (-) 732 WP_044174434.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ACOI0R_RS07645 endA 453259..453963 (-) 705 WP_005297700.1 deoxyribonuclease I -
  ACOI0R_RS07650 - 454094..454576 (-) 483 WP_036763215.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41354.51 Da        Isoelectric Point: 5.5884

>NTDB_id=1111335 ACOI0R_RS07620 WP_005297691.1 448855..449961(+) (pilU) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
MKLQEILNQVVERKASDLYITVDSPCLLKVDGVLHPIGDTLDRTGVDLLFDEAMDSALYQEFVDTREANFALVRGDWRFR
VSAFWQRELPGMVVRRIETDIPDIFSLKLPMDMQKMALAKRGLVLVVGATGSGKSTSMAAMTGFRNQNRSGHILTVEDPI
EFVHKHDKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRTQETMEYAMNFAETGHLCMATLHANNANQALERILH
LVPKERQHQFLFDLSLNLKCILAQQLIPDAHGQGRHAAFELLINTPRVADLIRRGELYEIKDVMAKSGESGMMTFDQSLY
ELFTKGAITEQDALHHADSPNDLRLMIKVGSKDKTAINALDGVTVDFN

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1111335 ACOI0R_RS07620 WP_005297691.1 448855..449961(+) (pilU) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
ATGAAACTACAAGAAATTTTAAATCAGGTTGTTGAACGTAAAGCGTCGGATCTCTATATCACCGTGGATTCTCCGTGCCT
ATTAAAAGTGGATGGTGTGTTGCATCCCATTGGCGATACGTTAGATCGTACTGGGGTTGATTTACTGTTTGATGAGGCGA
TGGACAGTGCTTTATATCAAGAGTTTGTTGATACCCGAGAAGCGAATTTTGCTTTAGTTCGGGGCGATTGGCGGTTTCGT
GTTAGTGCGTTTTGGCAGCGAGAATTACCCGGCATGGTTGTTCGTCGGATTGAAACAGATATTCCAGATATCTTTAGCCT
GAAATTGCCGATGGATATGCAAAAAATGGCTCTAGCTAAACGCGGTTTAGTTTTAGTGGTTGGTGCAACGGGGTCGGGTA
AATCGACTTCGATGGCGGCAATGACCGGGTTTCGAAATCAAAATCGCAGTGGCCATATTTTAACGGTTGAAGATCCGATT
GAATTTGTCCACAAACACGATAAATGCATAGTGACTCAGCGTGAAGTTGGTCTCGATACTGAGAGTTATGAAGTGGCGCT
TAAGAACTCTTTGCGACAAGCGCCTGATATGATCTTAATCGGCGAAATTCGTACGCAAGAGACGATGGAATATGCGATGA
ATTTTGCGGAAACGGGTCATTTATGTATGGCCACACTGCACGCCAATAATGCTAACCAAGCGTTAGAGCGCATTCTGCAT
CTGGTACCGAAAGAGCGCCAACATCAGTTTTTGTTTGATTTATCCTTGAACCTTAAATGCATTTTAGCTCAGCAACTTAT
CCCTGATGCTCATGGTCAAGGACGGCATGCAGCCTTTGAACTGTTAATTAATACACCGCGAGTGGCAGATCTTATTCGTC
GTGGTGAACTTTATGAAATCAAAGATGTGATGGCCAAATCAGGTGAATCGGGAATGATGACTTTTGATCAGTCGTTGTAT
GAGTTATTCACTAAAGGTGCCATTACAGAACAAGATGCTCTTCATCATGCGGATTCTCCAAATGATTTACGTTTAATGAT
CAAAGTAGGGAGTAAAGATAAAACGGCGATCAATGCGTTGGATGGGGTAACGGTAGATTTTAATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3I981

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

68.12

99.728

0.679
  pilU Pseudomonas stutzeri DSM 10701

59.497

97.283

0.579
  pilU Acinetobacter baylyi ADP1

55.211

96.467

0.533
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.449

93.75

0.389
  pilT Legionella pneumophila strain Lp02

40.299

91.033

0.367
  pilT Legionella pneumophila strain ERS1305867

40.299

91.033

0.367

Multiple sequence alignment