Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACNR93_RS08560 Genome accession   NZ_CP184736
Coordinates   1734124..1736097 (-) Length   657 a.a.
NCBI ID   WP_420543583.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1729124..1741097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08540 (ACNR93_08540) amiF 1729640..1730569 (-) 930 WP_420543582.1 ATP-binding cassette domain-containing protein Regulator
  ACNR93_RS08545 (ACNR93_08545) amiE 1730562..1731629 (-) 1068 WP_015695757.1 ABC transporter ATP-binding protein Regulator
  ACNR93_RS08550 (ACNR93_08550) amiD 1731638..1732564 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  ACNR93_RS08555 (ACNR93_08555) amiC 1732564..1734063 (-) 1500 WP_134775673.1 ABC transporter permease Regulator
  ACNR93_RS08560 (ACNR93_08560) amiA 1734124..1736097 (-) 1974 WP_420543583.1 peptide ABC transporter substrate-binding protein Regulator
  ACNR93_RS08565 (ACNR93_08565) - 1736370..1737536 (-) 1167 WP_039691319.1 CynX/NimT family MFS transporter -
  ACNR93_RS08570 (ACNR93_08570) gltX 1737735..1739192 (-) 1458 WP_021143229.1 glutamate--tRNA ligase -
  ACNR93_RS08575 (ACNR93_08575) - 1739371..1740297 (-) 927 WP_420543584.1 aldo/keto reductase -
  ACNR93_RS08580 (ACNR93_08580) - 1740326..1740823 (-) 498 WP_420543585.1 beta-class carbonic anhydrase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72892.45 Da        Isoelectric Point: 4.5026

>NTDB_id=1110977 ACNR93_RS08560 WP_420543583.1 1734124..1736097(-) (amiA) [Streptococcus equinus strain NM-2-29]
MNKRGKWILSAGVVLLSASVLAACGNGKTSSSATSTYNYVYNSEPVSLDYIKMNQSGTSNITANLIDGLMENDQYGDLIP
SLAKDWKVSADGLTYTYTIRDDAKWYTADGEEYADVTAEDFVTGLKHAADVESEALYVVQDSIKGLQDYIDGKTKDFSTV
GVKAVDDHTIQYTLNAPESYWNSKLTYGIMCPVNADFLKSKGNDFGKQTDPESLLYNGPYLLKSITAKSSMEFEKNPNYW
DADNVHIDDVKLTYFDGSDQDSLFNNFDEGSYTSAALYPSSPSYKTAEKKYSDNIVYAQQDASTFMIYFNLNRTLHNLSD
KTDAQLSDSNKAMNNKDFRQAVTFAFDRASWNAQTAGEEAKNKALRNSLVPPAFVQVDGKEFGDVVKSDLASYGDEWKDV
DLTDAQDGLYNPDKAKTEFAKAKSALESEGVSFPIQLDFPVAQTNNDSVQRAQSLKQSVESNLGKENVVINLKQVTEDEY
LSATYQAESPEQNDYDLGFSGWSPDYSDPSSYLDIFGTGKTAAMTYRLGISSDNDALIKSTGLDQYQSLLDEANALKDSD
QVDQRYETYAKAQAWLTDSALAIPTVTNGARPQVTRVKPFSTAWSYVGIKGGTYKYLKLQDKPVTAKEYAKARNKWLKDK
EKANEKATKELAKHVEK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=1110977 ACNR93_RS08560 WP_420543583.1 1734124..1736097(-) (amiA) [Streptococcus equinus strain NM-2-29]
ATGAATAAAAGAGGAAAATGGATTTTAAGTGCTGGTGTTGTGCTACTATCTGCATCAGTGCTTGCAGCTTGTGGTAATGG
TAAAACTTCAAGCTCTGCAACGTCAACTTATAACTATGTCTACAATTCTGAACCAGTTTCACTTGATTATATTAAGATGA
ACCAATCTGGTACAAGTAACATTACAGCAAATCTTATTGATGGTTTGATGGAAAATGACCAGTATGGCGACTTGATTCCG
TCACTTGCAAAAGATTGGAAAGTGTCAGCTGATGGTTTGACTTACACTTATACAATTCGTGATGATGCCAAATGGTATAC
TGCTGATGGTGAAGAATATGCGGATGTAACAGCGGAAGATTTTGTTACAGGTCTCAAACACGCTGCAGATGTTGAATCAG
AAGCTCTTTATGTTGTGCAAGATTCAATTAAAGGTTTGCAGGATTATATTGATGGCAAGACAAAAGACTTCTCAACAGTT
GGTGTTAAAGCAGTTGATGACCATACTATTCAATATACGCTGAACGCCCCTGAATCATATTGGAATTCTAAATTAACTTA
CGGTATTATGTGTCCAGTAAATGCGGACTTCTTAAAATCAAAAGGTAATGATTTTGGTAAACAAACTGACCCTGAATCAT
TGCTTTATAACGGTCCATACTTACTAAAATCAATTACAGCCAAATCTTCAATGGAATTTGAAAAGAACCCGAATTATTGG
GATGCTGACAACGTCCATATCGATGATGTTAAGTTGACTTATTTTGACGGTTCAGACCAAGATTCACTCTTTAATAATTT
TGATGAAGGTTCATATACAAGTGCAGCCTTGTATCCATCATCTCCAAGCTATAAAACAGCAGAAAAGAAATATAGTGATA
ATATTGTTTATGCTCAACAAGATGCTTCAACATTTATGATTTACTTCAATTTAAATCGTACTTTGCATAATTTATCAGAT
AAAACAGATGCGCAATTATCTGATTCTAATAAAGCTATGAACAATAAAGACTTCCGTCAAGCAGTGACATTTGCATTTGA
CCGTGCTTCATGGAATGCTCAAACTGCAGGTGAAGAAGCTAAAAATAAAGCTTTGCGTAACAGCTTGGTACCACCAGCAT
TTGTTCAAGTTGATGGCAAAGAATTTGGTGATGTGGTTAAAAGTGACCTAGCATCATATGGTGATGAGTGGAAAGATGTT
GATCTTACTGATGCTCAAGATGGTTTGTATAACCCAGATAAAGCAAAAACAGAATTTGCTAAAGCCAAATCAGCTCTTGA
ATCAGAAGGCGTCAGCTTCCCAATCCAACTTGATTTCCCAGTTGCTCAAACTAACAACGATTCTGTACAACGTGCACAAT
CATTAAAACAGTCAGTTGAATCTAATCTCGGTAAAGAAAATGTAGTGATTAACCTTAAACAAGTCACAGAAGATGAGTAC
TTATCGGCAACTTATCAAGCAGAAAGTCCTGAGCAAAATGACTATGACCTAGGCTTCTCAGGCTGGTCACCAGACTATTC
TGATCCATCTTCATATCTTGATATCTTTGGTACAGGTAAGACAGCGGCAATGACATATCGTCTTGGTATTTCTTCAGATA
ACGATGCCTTGATTAAATCTACTGGTCTTGATCAATATCAAAGCTTGCTTGATGAAGCAAATGCTCTTAAAGATTCAGAT
CAGGTTGATCAACGTTATGAAACATACGCAAAAGCTCAAGCATGGTTGACAGATAGTGCACTAGCTATTCCAACTGTTAC
TAATGGTGCTCGCCCACAAGTGACAAGGGTAAAACCATTTTCAACTGCTTGGTCATACGTTGGTATTAAAGGTGGAACTT
ATAAATATCTAAAACTACAAGATAAACCTGTAACAGCTAAAGAATACGCAAAAGCTCGCAATAAATGGCTTAAAGATAAA
GAAAAAGCCAATGAAAAAGCTACAAAAGAATTAGCTAAACACGTGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.242

100

0.545
  amiA3 Streptococcus thermophilus LMD-9

52.879

100

0.531
  amiA3 Streptococcus thermophilus LMG 18311

52.727

100

0.53

Multiple sequence alignment