Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACNR93_RS08550 Genome accession   NZ_CP184736
Coordinates   1731638..1732564 (-) Length   308 a.a.
NCBI ID   WP_015695758.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726638..1737564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08535 (ACNR93_08535) - 1728250..1729440 (-) 1191 WP_021143227.1 argininosuccinate synthase -
  ACNR93_RS08540 (ACNR93_08540) amiF 1729640..1730569 (-) 930 WP_420543582.1 ATP-binding cassette domain-containing protein Regulator
  ACNR93_RS08545 (ACNR93_08545) amiE 1730562..1731629 (-) 1068 WP_015695757.1 ABC transporter ATP-binding protein Regulator
  ACNR93_RS08550 (ACNR93_08550) amiD 1731638..1732564 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  ACNR93_RS08555 (ACNR93_08555) amiC 1732564..1734063 (-) 1500 WP_134775673.1 ABC transporter permease Regulator
  ACNR93_RS08560 (ACNR93_08560) amiA 1734124..1736097 (-) 1974 WP_420543583.1 peptide ABC transporter substrate-binding protein Regulator
  ACNR93_RS08565 (ACNR93_08565) - 1736370..1737536 (-) 1167 WP_039691319.1 CynX/NimT family MFS transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34751.68 Da        Isoelectric Point: 7.9086

>NTDB_id=1110975 ACNR93_RS08550 WP_015695758.1 1731638..1732564(-) (amiD) [Streptococcus equinus strain NM-2-29]
MTNIDKSKFEFVELDSSASEVIDTPTYSYWKSVFRQFFSKKSTIAMLILLIAILLMSFIYPMFSNFDFNDVSDINDFSKR
YVWPNSQYWFGTDKNGQSLFDGVWYGARNSILISVIATIINMVIGLVVGLLWGISKAVDKIMIEIYNVISNLPFILIVMI
LTYSLGSGFWNLILAFCITGWVGIAYSIRVQVMRYRDLEYNLASRTLGTPTIKIATKNLLPQLVSVIVTMVSQMLPSYIS
YEAFLSAFGIGLPVTEPSLGRLISNYSSNLTTNAYLFWIPLATLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1110975 ACNR93_RS08550 WP_015695758.1 1731638..1732564(-) (amiD) [Streptococcus equinus strain NM-2-29]
ATGACTAATATAGACAAAAGTAAATTTGAATTTGTTGAGTTAGATAGTAGTGCCTCTGAAGTTATTGATACACCGACTTA
TTCATATTGGAAATCAGTTTTTAGACAATTCTTTTCTAAAAAGTCGACAATAGCAATGCTTATTTTGCTAATTGCAATTC
TTCTGATGAGTTTTATCTATCCAATGTTTTCAAATTTTGATTTCAATGATGTCAGTGATATTAACGATTTTTCAAAACGC
TATGTTTGGCCAAATAGTCAGTACTGGTTTGGTACGGATAAGAATGGTCAGTCGCTGTTTGATGGTGTTTGGTACGGCGC
TAGAAATTCTATATTGATTTCGGTTATTGCTACTATTATTAATATGGTTATTGGGCTTGTAGTAGGACTACTTTGGGGGA
TTTCTAAAGCAGTCGATAAAATCATGATTGAAATTTATAACGTTATTTCAAATCTTCCATTTATCTTAATCGTTATGATT
TTAACGTATTCTCTAGGTTCAGGATTTTGGAATTTGATTTTGGCATTTTGTATTACAGGTTGGGTTGGTATTGCTTACTC
TATTCGTGTTCAAGTAATGCGCTATCGTGATTTGGAATACAATCTTGCTAGTCGTACTTTAGGAACACCAACTATAAAAA
TTGCGACCAAAAACCTTTTACCCCAATTAGTCTCTGTTATTGTTACTATGGTTTCTCAGATGTTGCCATCATACATTTCA
TATGAAGCCTTCTTATCTGCTTTTGGTATTGGACTTCCAGTCACTGAACCAAGTCTAGGCCGTTTGATTTCAAATTATTC
TTCTAATTTGACAACAAATGCTTATCTTTTCTGGATTCCATTAGCAACGCTCATTTTAGTATCGCTTCCTCTCTATATTG
TTGGGCAAAATCTTGCTGATGCTAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

76.299

100

0.763
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment