Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACNR93_RS08540 Genome accession   NZ_CP184736
Coordinates   1729640..1730569 (-) Length   309 a.a.
NCBI ID   WP_420543582.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724640..1735569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08520 (ACNR93_08520) - 1725122..1725937 (-) 816 WP_024344383.1 YidC/Oxa1 family membrane protein insertase -
  ACNR93_RS08525 (ACNR93_08525) rnpA 1725921..1726280 (-) 360 WP_024344384.1 ribonuclease P protein component -
  ACNR93_RS08530 (ACNR93_08530) argH 1726432..1727814 (-) 1383 WP_134775670.1 argininosuccinate lyase -
  ACNR93_RS08535 (ACNR93_08535) - 1728250..1729440 (-) 1191 WP_021143227.1 argininosuccinate synthase -
  ACNR93_RS08540 (ACNR93_08540) amiF 1729640..1730569 (-) 930 WP_420543582.1 ATP-binding cassette domain-containing protein Regulator
  ACNR93_RS08545 (ACNR93_08545) amiE 1730562..1731629 (-) 1068 WP_015695757.1 ABC transporter ATP-binding protein Regulator
  ACNR93_RS08550 (ACNR93_08550) amiD 1731638..1732564 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  ACNR93_RS08555 (ACNR93_08555) amiC 1732564..1734063 (-) 1500 WP_134775673.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35032.00 Da        Isoelectric Point: 6.3510

>NTDB_id=1110973 ACNR93_RS08540 WP_420543582.1 1729640..1730569(-) (amiF) [Streptococcus equinus strain NM-2-29]
MTEKLVEVKNLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSNGDILYAGKRINGKKTSA
EHSDLISKIQMIFQDPAASLNERATVDYIISEGLYNFHHFEDDADRKRKVAEMMTEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRIQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTRSLLSAVPIPDPILERQKELIVYDPDQHDYSTDKPEMVEIRPNHFVWANKDELSDYQKRLNK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1110973 ACNR93_RS08540 WP_420543582.1 1729640..1730569(-) (amiF) [Streptococcus equinus strain NM-2-29]
ATGACTGAAAAATTAGTTGAAGTAAAAAATTTGGAAATTTCCTTTGGTGAAGGAAAAAAGAAATTTGTTGCGGTTAAAAA
TGCAAATTTTTTCATCAATAAAGGTGAGACTTTCTCATTAGTTGGTGAATCAGGTTCTGGGAAAACAACCATCGGTCGTG
CTATCATCGGATTGAATGAGACAAGTAATGGCGATATTTTATATGCTGGTAAACGTATTAACGGTAAAAAAACATCTGCT
GAGCATAGTGATTTGATTTCCAAAATTCAAATGATTTTCCAAGATCCAGCAGCTAGTTTAAATGAGCGAGCAACCGTTGA
TTATATTATTTCGGAGGGCTTATATAATTTTCATCATTTTGAAGATGATGCTGATCGAAAACGTAAAGTAGCAGAGATGA
TGACTGAGGTAGGATTATTGCCAGAGCATTTGACACGTTATCCACATGAATTTTCAGGGGGACAACGTCAGCGTATTGGA
ATTGCGCGTGCTTTGGTCATGGATCCTGAATTTATCATTGCAGATGAACCAATCTCAGCTTTGGATGTCTCAGTGCGTGC
TCAAGTATTAAATCTTTTGAAACGCATCCAGAGGGAAAAAGGCTTAACCTATCTCTTTATCGCACATGATTTGTCTGTGG
TTCGTTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTTGAAGTAGCGGAGACAGAAGAGCTATTTAAT
AATCCAATCCATCCTTATACACGTTCATTACTTTCAGCGGTTCCAATTCCAGATCCTATTCTTGAACGCCAAAAAGAATT
AATAGTGTATGATCCAGATCAACACGACTACTCAACAGATAAACCAGAAATGGTGGAGATTCGCCCTAATCATTTTGTTT
GGGCAAATAAGGATGAGTTATCTGACTACCAAAAACGATTAAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

79.935

100

0.799
  amiF Streptococcus thermophilus LMG 18311

79.612

100

0.796
  amiF Streptococcus salivarius strain HSISS4

79.288

100

0.793

Multiple sequence alignment