Detailed information NTG1110924

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: ACNR93_RS00700
• Genome accession: NZ_CP184736
• Coordinates: 104627..105064 (+)
• Length: 145 a.a.
• NCBI ID: WP_003067903.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NM-2-29
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 99627..110064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNR93_RS00670 (ACNR93_00670)	-	101343..101711 (+)	369	WP_021141429.1	DUF1033 family protein	-
ACNR93_RS00675 (ACNR93_00675)	comYA	101780..102721 (+)	942	WP_420543665.1	competence type IV pilus ATPase ComGA	Machinery gene
ACNR93_RS00680 (ACNR93_00680)	comYB	102645..103688 (+)	1044	WP_420544055.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACNR93_RS00685 (ACNR93_00685)	comGC/cglC	103688..103981 (+)	294	WP_033151921.1	competence type IV pilus major pilin ComGC	Machinery gene
ACNR93_RS00690 (ACNR93_00690)	comGD	103965..104396 (+)	432	WP_420543666.1	competence type IV pilus minor pilin ComGD	-
ACNR93_RS00695 (ACNR93_00695)	comYE	104350..104643 (+)	294	WP_134775786.1	competence type IV pilus minor pilin ComGE	Machinery gene
ACNR93_RS00700 (ACNR93_00700)	comYF	104627..105064 (+)	438	WP_003067903.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACNR93_RS00705 (ACNR93_00705)	comGG	105051..105386 (+)	336	WP_200769899.1	competence type IV pilus minor pilin ComGG	-
ACNR93_RS00710 (ACNR93_00710)	comYH	105440..106396 (+)	957	WP_033151900.1	class I SAM-dependent methyltransferase	Machinery gene
ACNR93_RS00715 (ACNR93_00715)	-	106450..107649 (+)	1200	WP_420543667.1	acetate kinase	-
ACNR93_RS00720 (ACNR93_00720)	-	107807..108004 (+)	198	WP_021141442.1	helix-turn-helix transcriptional regulator	-
ACNR93_RS00725 (ACNR93_00725)	-	108060..108512 (+)	453	WP_074483978.1	ABC transporter permease	-
ACNR93_RS00730 (ACNR93_00730)	-	108524..109159 (+)	636	WP_420543668.1	CPBP family intramembrane glutamic endopeptidase	-
ACNR93_RS00735 (ACNR93_00735)	proC	109211..109981 (-)	771	WP_045798324.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16620.84 Da
• Isoelectric Point: 5.2435

>NTDB_id=1110924 ACNR93_RS00700 WP_003067903.1 104627..105064(+) (comYF) [Streptococcus equinus strain NM-2-29]
MLRRTRLKAFTLLESLVALLVISGTVLVYQGLTQSISQNVYYLSDNEENEWLLFSQQLRSELERCHLDCVSDNKLYVSKD
DKKLAYGLSKADDFRKTNASGQGYQPMLFGVNSSSIRQDGNNILIKLRMDNGMEREFVYTFDEAS

Nucleotide

• Length: 438 bp

>NTDB_id=1110924 ACNR93_RS00700 WP_003067903.1 104627..105064(+) (comYF) [Streptococcus equinus strain NM-2-29]
ATGTTAAGAAGAACTAGACTAAAGGCGTTTACGTTACTTGAAAGTTTGGTTGCTTTGCTGGTTATTTCAGGGACAGTTCT
GGTTTATCAAGGGCTAACGCAGTCAATTTCACAAAATGTTTATTACTTGTCTGATAACGAAGAAAATGAGTGGCTTTTAT
TTTCTCAGCAGCTGCGCTCAGAATTAGAACGATGCCACTTAGATTGTGTTTCTGACAATAAACTTTATGTTAGTAAGGAC
GATAAGAAATTAGCTTACGGGCTATCAAAAGCAGATGATTTTCGTAAAACAAATGCTTCTGGTCAAGGCTATCAGCCAAT
GTTATTTGGTGTTAATTCTTCTAGCATTCGTCAGGATGGTAATAATATTTTGATTAAGCTGCGAATGGATAATGGTATGG
AGAGAGAGTTTGTTTACACTTTTGATGAGGCAAGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	55.714	96.552	0.538
comYF	Streptococcus mutans UA159	55	96.552	0.531
comGF	Lactococcus lactis subsp. cremoris KW2	48.551	95.172	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae D39	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae R6	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae TIGR4	47.101	95.172	0.448
comGF/cglF	Streptococcus mitis NCTC 12261	45.324	95.862	0.434
comGF/cglF	Streptococcus mitis SK321	44.604	95.862	0.428