Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   ACNR93_RS00695 Genome accession   NZ_CP184736
Coordinates   104350..104643 (+) Length   97 a.a.
NCBI ID   WP_134775786.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99350..109643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS00670 (ACNR93_00670) - 101343..101711 (+) 369 WP_021141429.1 DUF1033 family protein -
  ACNR93_RS00675 (ACNR93_00675) comYA 101780..102721 (+) 942 WP_420543665.1 competence type IV pilus ATPase ComGA Machinery gene
  ACNR93_RS00680 (ACNR93_00680) comYB 102645..103688 (+) 1044 WP_420544055.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACNR93_RS00685 (ACNR93_00685) comGC/cglC 103688..103981 (+) 294 WP_033151921.1 competence type IV pilus major pilin ComGC Machinery gene
  ACNR93_RS00690 (ACNR93_00690) comGD 103965..104396 (+) 432 WP_420543666.1 competence type IV pilus minor pilin ComGD -
  ACNR93_RS00695 (ACNR93_00695) comYE 104350..104643 (+) 294 WP_134775786.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACNR93_RS00700 (ACNR93_00700) comYF 104627..105064 (+) 438 WP_003067903.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACNR93_RS00705 (ACNR93_00705) comGG 105051..105386 (+) 336 WP_200769899.1 competence type IV pilus minor pilin ComGG -
  ACNR93_RS00710 (ACNR93_00710) comYH 105440..106396 (+) 957 WP_033151900.1 class I SAM-dependent methyltransferase Machinery gene
  ACNR93_RS00715 (ACNR93_00715) - 106450..107649 (+) 1200 WP_420543667.1 acetate kinase -
  ACNR93_RS00720 (ACNR93_00720) - 107807..108004 (+) 198 WP_021141442.1 helix-turn-helix transcriptional regulator -
  ACNR93_RS00725 (ACNR93_00725) - 108060..108512 (+) 453 WP_074483978.1 ABC transporter permease -
  ACNR93_RS00730 (ACNR93_00730) - 108524..109159 (+) 636 WP_420543668.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10988.88 Da        Isoelectric Point: 6.7240

>NTDB_id=1110923 ACNR93_RS00695 WP_134775786.1 104350..104643(+) (comYE) [Streptococcus equinus strain NM-2-29]
MVIIKRQKLKAYILLESLVALALLATITILVLGEMDKSRQQIQDSLHQQEVLNVATMAVQTGQDDLVMNGVEVHITRRDG
ELYVYDGQKEVMHVKKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1110923 ACNR93_RS00695 WP_134775786.1 104350..104643(+) (comYE) [Streptococcus equinus strain NM-2-29]
GTGGTAATTATAAAAAGACAGAAACTAAAAGCTTACATACTCCTTGAAAGTTTGGTTGCTTTAGCTTTGCTAGCTACCAT
TACAATTCTTGTCTTGGGAGAAATGGATAAAAGTCGCCAACAGATACAAGATAGCTTACATCAGCAAGAAGTTCTCAATG
TCGCTACTATGGCTGTTCAAACAGGGCAAGATGACTTGGTGATGAATGGTGTTGAGGTTCATATTACTAGACGAGACGGA
GAACTTTATGTCTATGATGGGCAAAAAGAGGTGATGCATGTTAAGAAGAACTAG

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

50

98.969

0.495
  comYE Streptococcus mutans UA159

50

98.969

0.495
  comGE/cglE Streptococcus pneumoniae Rx1

43.011

95.876

0.412
  comGE/cglE Streptococcus pneumoniae D39

43.011

95.876

0.412
  comGE/cglE Streptococcus pneumoniae R6

43.011

95.876

0.412
  comGE/cglE Streptococcus pneumoniae TIGR4

43.011

95.876

0.412
  comGE/cglE Streptococcus mitis SK321

41.935

95.876

0.402
  comGE/cglE Streptococcus mitis NCTC 12261

41.935

95.876

0.402

Multiple sequence alignment